Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9m15
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.04c |taf11||transcription factor TFIID complex subunit ...    27   1.9  
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    26   5.8  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    26   5.8  

>SPAC1002.04c |taf11||transcription factor TFIID complex subunit
           Taf11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 435 GKAQSEPSFRCNIWFDNNNKPKAGKFSYRAITEPVGE 545
           G A S P F+ ++ +D +N P AG  +      P  E
Sbjct: 5   GSASSVPRFQRSMSYDQSNSPTAGAHAKANTASPAAE 41


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = -3

Query: 405 RMGSTCYIFDMTSRMMCMHKSFHLF 331
           ++ +T  +FD + +++ +H+  HLF
Sbjct: 134 KLYNTAMVFDPSGKLIAVHRKIHLF 158


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 86  RNHEEILPTYSHRHLSDQRSNVTHIPPRILPA 181
           ++H E+ P    + L + RS  T+IPP  L A
Sbjct: 71  KSHNELDPKAQIKKLMETRSGGTYIPPAKLKA 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,849
Number of Sequences: 5004
Number of extensions: 58082
Number of successful extensions: 170
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)