Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9m15
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0152 - 1754113-1754286,1754396-1754551,1755273-1756194,175... 31 1.1
11_01_0349 - 2614682-2614721,2614881-2614955,2615346-2615538,261... 29 3.4
10_01_0141 - 1686827-1687063,1687160-1687315,1688046-1688974,168... 29 3.4
06_01_1191 + 10240754-10240909,10241477-10241547,10241872-10242910 29 3.4
10_01_0132 - 1601421-1601657,1601761-1601922,1602812-1603721,160... 29 4.5
06_03_0677 - 23440273-23440749,23440824-23440985,23442007-23442627 29 4.5
05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717 29 4.5
11_05_0081 - 18924353-18924462,18925068-18925187,18925569-189260... 28 6.0
07_03_0050 + 12817959-12818281,12818604-12818688,12819144-128192... 28 7.9
>10_01_0152 - 1754113-1754286,1754396-1754551,1755273-1756194,
1756364-1756414,1757540-1757946,1758918-1759067,
1759178-1759333,1760175-1761041
Length = 960
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +3
Query: 333 IDENFYAYTSFLKSYQKYNKLTPSDVHNIDTIVIGKAQSEPSFRC 467
+D NFY FL++ K KLT N +IGK + + SF C
Sbjct: 877 LDANFYGLVVFLQNAPKLEKLTLELEKNTPERIIGKLE-DRSFTC 920
>11_01_0349 -
2614682-2614721,2614881-2614955,2615346-2615538,
2615654-2616287
Length = 313
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 342 NFYAYTSFLKSYQKYNKLTPSDVHNIDTIVIGKAQSEPSF 461
NF+ + + K + LTPSDV ++ +VI K +E F
Sbjct: 25 NFHYHHHYEKEHMFEKPLTPSDVGKLNRLVIPKQHAERYF 64
>10_01_0141 -
1686827-1687063,1687160-1687315,1688046-1688974,
1689595-1689640,1689914-1689932,1690751-1690962,
1691063-1691218,1692240-1693184,1693448-1693597
Length = 949
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +3
Query: 333 IDENFYAYTSFLKSYQKYNKLT---PSDVHNIDTIVIGKAQSEPSFRC 467
+D NFYA T FL++ K KLT I +IG+ +E SF C
Sbjct: 845 LDANFYALTVFLQNSPKLQKLTLKLAKCTSEIHQRIIGEL-TERSFTC 891
>06_01_1191 + 10240754-10240909,10241477-10241547,10241872-10242910
Length = 421
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = -3
Query: 459 NWVHSAPYRLLSYLYCVHRMGSTCYIFDMTSRMMCMHKSFHLFVETRVAFL 307
NW + + YLY H G T I +M +H ++ +V ++ F+
Sbjct: 241 NWFRELKHLVKIYLYKSHLNGDTMEILGELHNLMDLHFRWYAYVGEKLVFI 291
>10_01_0132 - 1601421-1601657,1601761-1601922,1602812-1603721,
1604587-1604651,1604704-1604746,1605086-1605128,
1605874-1605955,1606270-1606464,1606567-1606721,
1611207-1611435,1611538-1611693,1612539-1613476,
1614946-1614967
Length = 1078
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 333 IDENFYAYTSFLKSYQKYNKLTPSDVHNIDT-IVIGKAQSEPSFRC 467
++ NFY T FL++ K KLT ++ + T ++GK + E SF C
Sbjct: 974 LESNFYGLTVFLQNSPKLEKLT-LKLNKVHTRRIVGKLK-EKSFTC 1017
>06_03_0677 - 23440273-23440749,23440824-23440985,23442007-23442627
Length = 419
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 342 NFYAYTSFLKSYQKYNKLTPSDVHNIDTIVIGKA 443
N+YAY + K Y+K K ++ NI T++IG A
Sbjct: 302 NYYAYDTLKKLYRKTFK--QEEISNIATLLIGSA 333
>05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717
Length = 415
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 342 NFYAYTSFLKSYQKYNKLTPSDVHNIDTIVIGKA 443
N++AY + K+Y+K K +++ N+ T++IG A
Sbjct: 300 NYFAYDTLKKAYKKMFK--TNEIGNVPTLLIGSA 331
>11_05_0081 -
18924353-18924462,18925068-18925187,18925569-18926086,
18927392-18927471,18927680-18927782,18928084-18928295,
18928392-18929210,18929331-18929444,18929935-18929983,
18930115-18930271,18930354-18930807,18930938-18931147
Length = 981
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -3
Query: 510 IFLLWVYYCCQTKYYSG-NWVHSAPYRLLSYLYCVHRMGSTCYIFDMTSRMMCMHKSFHL 334
+ LLW+ C Y + H A + ++ Y CV + G+ F+M ++ + ++
Sbjct: 391 VLLLWLAICAGLFTYKFIQYRHRAVFHVMGYCVCVAKGGAETLKFNMALILLPVCRNTVT 450
Query: 333 FVETRVA 313
++ R A
Sbjct: 451 WIRNRAA 457
>07_03_0050 +
12817959-12818281,12818604-12818688,12819144-12819213,
12819900-12819970,12820417-12820440
Length = 190
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 339 ENFYAYTSFLKSYQKYNKLTPSDVHNIDTIVIGKA 443
EN Y+S +K++ K+ SDV ++ + I KA
Sbjct: 116 ENTLNYSSKIKAHPKHEPFEESDVLKVELVTINKA 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,271,664
Number of Sequences: 37544
Number of extensions: 315658
Number of successful extensions: 747
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -