Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9m15
         (683 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF303585-1|AAO32941.1|  959|Homo sapiens NCOR isoform c protein.       31   3.8  
AF087856-1|AAP97166.1| 2343|Homo sapiens nuclear receptor co-rep...    31   3.8  
AF044209-1|AAC33550.1| 2440|Homo sapiens nuclear receptor co-rep...    31   3.8  
AB028970-1|BAA82999.2| 2348|Homo sapiens KIAA1047 protein protein.     31   3.8  
AB019524-1|BAA75814.1| 1467|Homo sapiens nuclear receptor co-rep...    31   3.8  
AJ627969-1|CAF31315.1|  101|Homo sapiens immunoglobulin heavy ch...    31   5.0  
AJ298466-1|CAC01155.1|  113|Homo sapiens immunoglobulin heavy ch...    30   8.8  

>AF303585-1|AAO32941.1|  959|Homo sapiens NCOR isoform c protein.
          Length = 959

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -2

Query: 319 GGVSLISMDEFLSISDSIVALKPGPQNSISDSPGFPKKL 203
           GG S   MD    I  + +   P P NS S SPG P  L
Sbjct: 188 GGTSTPPMDRITYIPGTQITFPPRPYNSASMSPGHPTHL 226


>AF087856-1|AAP97166.1| 2343|Homo sapiens nuclear receptor
            co-repressor protein.
          Length = 2343

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -2

Query: 319  GGVSLISMDEFLSISDSIVALKPGPQNSISDSPGFPKKL 203
            GG S   MD    I  + +   P P NS S SPG P  L
Sbjct: 1572 GGTSTPPMDRITYIPGTQITFPPRPYNSASMSPGHPTHL 1610


>AF044209-1|AAC33550.1| 2440|Homo sapiens nuclear receptor
            co-repressor N-CoR protein.
          Length = 2440

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -2

Query: 319  GGVSLISMDEFLSISDSIVALKPGPQNSISDSPGFPKKL 203
            GG S   MD    I  + +   P P NS S SPG P  L
Sbjct: 1668 GGTSTPPMDRITYIPGTQITFPPRPYNSASMSPGHPTHL 1706


>AB028970-1|BAA82999.2| 2348|Homo sapiens KIAA1047 protein protein.
          Length = 2348

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -2

Query: 319  GGVSLISMDEFLSISDSIVALKPGPQNSISDSPGFPKKL 203
            GG S   MD    I  + +   P P NS S SPG P  L
Sbjct: 1695 GGTSTPPMDRITYIPGTQITFPPRPYNSASMSPGHPTHL 1733


>AB019524-1|BAA75814.1| 1467|Homo sapiens nuclear receptor
           co-repressor protein.
          Length = 1467

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -2

Query: 319 GGVSLISMDEFLSISDSIVALKPGPQNSISDSPGFPKKL 203
           GG S   MD    I  + +   P P NS S SPG P  L
Sbjct: 695 GGTSTPPMDRITYIPGTQITFPPRPYNSASMSPGHPTHL 733


>AJ627969-1|CAF31315.1|  101|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 101

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 468 YSGNWVHSAPYRLLSYLYCVHRMGSTCYIFDMTSRM 361
           YS +W+   P + L ++  +H  GST Y   +TSR+
Sbjct: 34  YSWSWIRQPPGKGLEWIGNIHHSGSTNYNPSLTSRV 69


>AJ298466-1|CAC01155.1|  113|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 113

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 477 TKYYSGNWVHSAPYRLLSYLYCVHRMGSTCYIFDMTSRM 361
           + YY  +W+   P + L ++  +H  GST Y   + SR+
Sbjct: 31  SSYYDWDWIRQPPGKGLEWIGSIHYSGSTFYSPALKSRV 69


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,936,653
Number of Sequences: 237096
Number of extensions: 1830320
Number of successful extensions: 11034
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11033
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)