Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9m10
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    29   0.91 
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    27   2.1  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   6.4  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    25   8.5  

>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 19/76 (25%), Positives = 32/76 (42%)
 Frame = +1

Query: 436 IYCKNLYFVRRYVCSVMSFYYKNIVNIQI*SGSTAERVLKWF*TVLFLLMLFIDYTLNIF 615
           + C  LY + R++    SF  K  V  +      A  +L W  ++LFL M    +  + F
Sbjct: 61  LVCLYLYLIYRWI--TRSFTVKQTVGSEFSGLRKAHGILLWLLSILFLGMTAFMFVNDAF 118

Query: 616 ETALRSESKWILVITF 663
            TA       I ++ +
Sbjct: 119 PTAFSDPPVKICLLAY 134


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 616 QIY*VYNL*KALIKTKQFKTISKHALQC 533
           Q++  YN  K L+ +KQF+ + + AL C
Sbjct: 284 QLFAFYNYVKGLVSSKQFQILIRFALVC 311


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -2

Query: 462  DKIQIFTVNKKPYHVLKITLNKNEFIYLHTTINLYYKAYSKIY 334
            +KIQI T     +    +    N+F++L T +   Y  Y  +Y
Sbjct: 1595 NKIQIITNITLDFDSFVLRTTVNDFLFLQTILRKIYNFYYALY 1637


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 390 FIYLHTTINLYYKAYSKIYATMNYNM 313
           F+YLH    LYY +Y K   TM +N+
Sbjct: 92  FLYLHIGRGLYYGSY-KYPRTMTWNI 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,061
Number of Sequences: 5004
Number of extensions: 57926
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)