Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9m07
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   1.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.1  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    27   2.1  
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    27   2.8  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    27   2.8  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   3.7  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    26   4.9  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   6.5  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   8.6  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    25   8.6  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    25   8.6  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   8.6  

>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 545 QHSSPQVPSAPTPQYSPACVQ 607
           +H +PQ PS+P   YSP  +Q
Sbjct: 290 EHHNPQTPSSPESAYSPENLQ 310


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +2

Query: 428  NRPPRCENTTCPTNSDKEKASNNSASKPCPLGRCGAGCKQHSSPQVPSAPTPQYSP 595
            N  P     T  + S +    NNS S   PL    AG    + P VPSAP+  ++P
Sbjct: 1575 NIAPATNLGTSQSFSPRMGPVNNSGS---PLAMNAAGQPSLAVPAVPSAPSNHFNP 1627


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/58 (24%), Positives = 23/58 (39%)
 Frame = +2

Query: 350 PDCKSIQPKEYRTDEAFSCDNSYCPANRPPRCENTTCPTNSDKEKASNNSASKPCPLG 523
           PD  S  P      E+     +Y P+  P +   T   +     ++S N A +P  +G
Sbjct: 278 PDMSSPVPASSVEYESLKAAVTYSPSQNPKKVAETDSESRKSSFQSSYNDADRPFQVG 335


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 567 GTWGLLCCLQPAPHLPK 517
           GTWG LC ++P   +P+
Sbjct: 151 GTWGGLCAMKPVSQIPE 167


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 537 VASSTAAPKYLVRPPRNILRHACSM 611
           VA+S + P  L +P  + L+HAC+M
Sbjct: 202 VANSLSEPFRLSKPKLDFLKHACTM 226


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +2

Query: 464 TNSDKEKASNNSASKPCPLGRCGAGCKQHSSPQVP 568
           TN D EK  NN AS    L   G      SSP+ P
Sbjct: 497 TNKDSEKNDNNDAS----LQSAGVASDGESSPETP 527


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +1

Query: 97  TKRKFNGNQSSPLC----PFAVNIINDQNVKMQ*SEKSL*DLLGSGVSKNWATMRG 252
           T +KF  N +S       P   N  +++NVK    +  + + + +   +NW T+RG
Sbjct: 113 TDKKFKPNDTSITANVFNPSIQNNTDEENVKPGLKQSQIKEFIPNVEERNWETVRG 168


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +2

Query: 383 RTDEAFSCDNSYCPANRPP----RCENTTCPTNSDKEKASNNSASKP 511
           RT + +  DN+Y PA + P    R  +   P NS    A+ N+   P
Sbjct: 166 RTSQMYMPDNNYSPAVKSPAAQRRSSSYMVPANSRGSPANYNTPYYP 212


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 23/110 (20%), Positives = 36/110 (32%), Gaps = 3/110 (2%)
 Frame = +2

Query: 200 CKICLGPVSQKTGLQCEGACDSWVHYGCLH-YTPGRINDIRKGIIKVTCPCPDCKSIQPK 376
           C +C   ++  T +   G C    H  C+  +    I    +   +    CP C+S Q +
Sbjct: 197 CSVCTDTINPSTSIWSCGTCYHVFHLSCIRKWCKNSIEQRNEDAWR----CPYCQSNQTE 252

Query: 377 EYRTDEAFSCDNSYCPANRPPRCENTTCPTNSDKE--KASNNSASKPCPL 520
              T   + C   +C     P       P +      K        PCPL
Sbjct: 253 ---TSLHYLC---WCGKQEKPEFVKNLVPHSCGDPCGKTRGQDCEHPCPL 296


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 242 QCEGACDSWVHYGC 283
           QCE  CD WVH  C
Sbjct: 350 QCE-RCDGWVHCAC 362


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 299 PECNVDNRSAPSCHKHPRIVAQFFETPDPSKSY 201
           P+ NV + +  + +KH  +V   F    P KS+
Sbjct: 267 PDKNVQSSAVENKNKHTNLVTSSFNLTKPMKSF 299


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 476 KEKASNNSASKPCPLGRCGAGCKQHSSPQVPSAPTPQ 586
           K+  S+ S S   PL         HS PQ+ + P P+
Sbjct: 65  KQTTSSPSFSHAAPLHPLSPPSFTHSQPQIQAQPVPR 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,580
Number of Sequences: 5004
Number of extensions: 55616
Number of successful extensions: 136
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)