Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9m05
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    28   1.4  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    27   1.9  
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    26   5.8  
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.8  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   5.8  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   5.8  
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    26   5.8  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   7.6  

>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +1

Query: 208 FSGTTNMDPTSTIISE 255
           FSGTT  DPT+TI SE
Sbjct: 701 FSGTTYSDPTTTITSE 716


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 176 LNSVPHLSLVARNYQLVFPFLTLFNVQINI 87
           LNS+  L +V   ++ V+ F  LFN+Q ++
Sbjct: 694 LNSILQLDIVTHPFKSVYAFSCLFNIQDDV 723


>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 232 PTSTIISEFNVFPLLHGYIPRFTEPPHERT 321
           P+S +I +F      HGYI  FTE    R+
Sbjct: 29  PSSKVIVKFLTVMQKHGYIDEFTEIDDHRS 58


>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 554 AVDTLEIIDTEKFDFQKFSEYYDDYKSAIEFTSGIL 661
           A+ T        F+ ++   Y+D ++S  +FTSGIL
Sbjct: 5   AISTARNFKYPLFNCERRFSYFDMFRSKRKFTSGIL 40


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 374 PNAPRIVPEAAQQVASLTPAEVIARHGGYEYIIPPLHKRLIAE 502
           PN   ++P    QVA LTP E  + + G +Y +  L + + A+
Sbjct: 252 PNGEILIPGIMDQVAELTPTE-DSIYDGIDYTMEDLKEAVGAD 293


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +2

Query: 374  PNAPRIVPEAAQQVASLT--PAEVIARHGGYEYIIPP 478
            PN P   P     VAS T  PA     HGG + + PP
Sbjct: 976  PNMPPSNPYTPIAVASSTVNPAHTYKPHGGSQIVPPP 1012


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 232 PTSTIISEFNVFPLLHGYIPRFTEPPHERT 321
           P+S +I +F      HGYI  FTE    R+
Sbjct: 29  PSSKVIVKFLTVMQKHGYIDEFTEIDDHRS 58


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -3

Query: 260 LNSDIIVLVGSIFVVPENMLHVLRMLSQLNSVPHLSLVARNYQLVFPFLTLF 105
           +N+D  VL     V+      +LR+L  +    ++SL+ R  Q V P++  +
Sbjct: 260 INTDSKVLPKLRPVLKSYGFSILRLLEGMTDAKNISLLLREAQNVLPYMITY 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,400
Number of Sequences: 5004
Number of extensions: 47814
Number of successful extensions: 96
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)