Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9m05
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0596 + 5253920-5254037,5254229-5254785                           30   2.0  
08_01_0592 + 5242446-5242563,5242754-5243310                           30   2.0  
08_01_0591 + 5236254-5236374,5236553-5237109                           30   2.0  
03_05_0772 - 27591175-27591864                                         29   4.5  
03_05_0771 - 27588194-27588877                                         29   4.5  
03_05_0770 - 27583855-27584544                                         29   4.5  

>08_01_0596 + 5253920-5254037,5254229-5254785
          Length = 224

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -3

Query: 305 GSVNLGM*PCNKGNTLNSDIIVLVGSIFVVPENMLHVLRMLSQLNSVPHLSLVA 144
           G++ +G    N  NTL S ++   G +FV PE ++H      Q N  PH   VA
Sbjct: 123 GTLYVGFVTSNPNNTLFSKVLNK-GDVFVFPEGLIHF-----QFNPNPHQPAVA 170


>08_01_0592 + 5242446-5242563,5242754-5243310
          Length = 224

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -3

Query: 305 GSVNLGM*PCNKGNTLNSDIIVLVGSIFVVPENMLHVLRMLSQLNSVPHLSLVA 144
           G++ +G    N  NTL S ++   G +FV PE ++H      Q N  PH   VA
Sbjct: 123 GTLYVGFVTSNPNNTLFSKVLNK-GDVFVFPEGLIHF-----QFNPNPHQPAVA 170


>08_01_0591 + 5236254-5236374,5236553-5237109
          Length = 225

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -3

Query: 305 GSVNLGM*PCNKGNTLNSDIIVLVGSIFVVPENMLHVLRMLSQLNSVPHLSLVA 144
           G++ +G    N  NTL S ++   G +FV PE ++H      Q N  PH   VA
Sbjct: 124 GTLYVGFVTSNPNNTLFSKVLNK-GDVFVFPEGLIHF-----QFNPNPHQPAVA 171


>03_05_0772 - 27591175-27591864
          Length = 229

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 245 IVLVGSIFVVPENMLHVLRMLSQLNSVPHLSLVARNYQLVFPFLTLF 105
           +V  G  FV+P  ++H    + +  +   +S  ++N  +VF  LTLF
Sbjct: 150 VVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLF 196


>03_05_0771 - 27588194-27588877
          Length = 227

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 245 IVLVGSIFVVPENMLHVLRMLSQLNSVPHLSLVARNYQLVFPFLTLF 105
           +V  G  FV+P  ++H    + +  +   +S  ++N  +VF  LTLF
Sbjct: 148 VVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLF 194


>03_05_0770 - 27583855-27584544
          Length = 229

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 245 IVLVGSIFVVPENMLHVLRMLSQLNSVPHLSLVARNYQLVFPFLTLF 105
           +V  G  FV+P  ++H    + +  +   +S  ++N  +VF  LTLF
Sbjct: 150 VVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLF 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,283,370
Number of Sequences: 37544
Number of extensions: 276554
Number of successful extensions: 538
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)