Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9m01
         (671 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    23   1.7  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    23   3.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.3  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 626 GFRMISLDYNSAAVDCGVRSFAAW 555
           G+R+I  +Y++   DCG   FA W
Sbjct: 461 GYRVILSNYDALYFDCG---FAGW 481


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 393 LGRRLPSSSCCVLRGAAP 340
           +GRRL S +  VLRG+ P
Sbjct: 61  VGRRLKSLAPLVLRGSCP 78


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +2

Query: 326 CRMMAGAAPRRTQQLLDGSLRPRFNRASIICGKE 427
           C ++  A  R    LLD   R R   A  + GK+
Sbjct: 8   CVLVTLATARNKAPLLDDGTRTRNKAAECVFGKQ 41


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,792
Number of Sequences: 336
Number of extensions: 2733
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)