Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9l18
(743 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 68 2e-12
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 45 1e-05
SPCC1442.13c |||RNA-binding protein, G-pathc type|Schizosaccharo... 43 4e-05
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 39 9e-04
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 38 0.002
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 31 0.13
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo... 30 0.30
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.53
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 29 0.70
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom... 28 1.6
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 2.1
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 27 2.1
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 27 2.8
SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha... 27 3.7
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 27 3.7
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 26 4.9
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|... 26 6.5
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 26 6.5
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 26 6.5
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 6.5
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 8.6
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 67.7 bits (158), Expect = 2e-12
Identities = 48/185 (25%), Positives = 92/185 (49%), Gaps = 16/185 (8%)
Frame = +3
Query: 69 LAGPRRKQKVINLRAKNNAWSNDSGKFGQRMLEKMGWSSGKGLGAKENGIVEHVVARYKN 248
LAG ++KQ+ I + +N+ W+ D+ + G ++L GW +G GLG K++G + ++ K+
Sbjct: 3 LAGVKKKQQ-IGVDPRNSKWAKDTNRLGFKLLSSYGWVNGNGLGEKQHGRIHNIKVSLKD 61
Query: 249 DDRGLGYEDKNDQWTKHEDDFNSLLANLSNDNGT------EAKLHSGVSLEHKS---KKS 401
D G+G + ND +FN++ L+ D +AK+ ++ E +S K
Sbjct: 62 DTLGIGAKATNDLEWSGLGEFNAIFGRLNGDESAYGVYAEKAKVQQ-LTYERQSANEKGL 120
Query: 402 KARVHYHKFTRGKDLT-------QYSEKDLANIFGKKSLTNDDKPQEKVQDNVKESDQKF 560
K+ +F G T Q +E+D + S +++ K +++ + + K+ +K
Sbjct: 121 KSLELSRRFVLGGTFTSEFSEWMQKAEEDEDRVCEDASSSDEAKREKRKKHSSKKKSKKK 180
Query: 561 TEKGS 575
T GS
Sbjct: 181 TSTGS 185
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 45.2 bits (102), Expect = 1e-05
Identities = 22/45 (48%), Positives = 30/45 (66%)
Frame = +3
Query: 132 NDSGKFGQRMLEKMGWSSGKGLGAKENGIVEHVVARYKNDDRGLG 266
N +G FG +MLEKMG+ G+GLGA GI E V ++ + + GLG
Sbjct: 114 NTTG-FGAKMLEKMGYKQGQGLGANAEGIAEPVQSKLRPERVGLG 157
>SPCC1442.13c |||RNA-binding protein, G-pathc
type|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 43.2 bits (97), Expect = 4e-05
Identities = 19/34 (55%), Positives = 28/34 (82%)
Frame = +3
Query: 135 DSGKFGQRMLEKMGWSSGKGLGAKENGIVEHVVA 236
++GK G+++LE MGWS GKGLG++ G+V+ VVA
Sbjct: 145 NNGK-GKQLLEMMGWSRGKGLGSENQGMVDPVVA 177
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 38.7 bits (86), Expect = 9e-04
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +3
Query: 150 GQRMLEKMGWSSGKGLGAKEN-GIVEHVVARYKNDDRGLG 266
G+R+LEK+GW +GKGLG EN G + + A K GLG
Sbjct: 656 GRRLLEKLGWYAGKGLGHPENEGSKDSLRAIVKVSRSGLG 695
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +3
Query: 132 NDSGKFGQRMLEKMGWSSGKGLGAKENGIVEHVVARYKNDDRGLG 266
+ + +ML MGW+ G GLG ENGI E + GLG
Sbjct: 488 HSTSNVSMKMLNSMGWNKGSGLGTNENGIKEAIQPTMYLPGVGLG 532
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 144 KFGQRMLEKMGWSSGKGLGAKENGIVEHVVARYKNDDRGLGYEDKNDQWTKH 299
K G +L ++G K A N V+H+V+ ND+ L + ++W H
Sbjct: 127 KIGPLLLTRIGLLKSKNT-ASNNYSVDHIVSNLANDNTLLNRQVSTEEWNSH 177
>SPAC2G11.04 |||RNA-binding protein, G-patch type
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 301
Score = 30.3 bits (65), Expect = 0.30
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 156 RMLEKMGWSSGKGLGAKENGIV 221
+ML++ GW G+GLG GI+
Sbjct: 258 KMLQRCGWKEGQGLGQHNQGII 279
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 29.5 bits (63), Expect = 0.53
Identities = 27/103 (26%), Positives = 49/103 (47%)
Frame = +3
Query: 276 KNDQWTKHEDDFNSLLANLSNDNGTEAKLHSGVSLEHKSKKSKARVHYHKFTRGKDLTQY 455
K+ + ++ F++L ++ + + E + S + K KKSK++ + D+ +
Sbjct: 115 KSSKKASPKNAFDALADDMDDLSLDEEESESSEKSKKKKKKSKSKDDGSEALDDGDI-ES 173
Query: 456 SEKDLANIFGKKSLTNDDKPQEKVQDNVKESDQKFTEKGSMEE 584
SEKD KKS NDD P K ++ ++K + SM E
Sbjct: 174 SEKDKKK--KKKSKENDDAP--KKDRKTRKKEEKARKLASMLE 212
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 29.1 bits (62), Expect = 0.70
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Frame = +3
Query: 186 GKGLGAKENGIVEHVVARYKNDDRGLGYEDKNDQWTK-HEDDFNSLLANLSNDNGTEAKL 362
GKG+ + + H ++ Y DD KN + K H D + +D
Sbjct: 131 GKGMYLMVDVAINHTISEYFEDDYF-----KNTYFDKTHIDHKCKEHCSCHHDKFPRPVP 185
Query: 363 HSGVSLEHKSKKSKARVHYHKFTR 434
H+G +HK K + H+ KF R
Sbjct: 186 HNGTKPDHKPWKHEEHCHHGKFPR 209
>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 288 WTKHEDDFNSLLANLSNDNGTEAKLHSGVSLEHKSKKSKARVHYHKF 428
+TK+ + NSLLANL ++ T A + + + + + A Y+KF
Sbjct: 254 FTKNRSEMNSLLANLKEEDKTNAAVTHALEV----RSAMATGDYYKF 296
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/71 (21%), Positives = 27/71 (38%)
Frame = +3
Query: 111 AKNNAWSNDSGKFGQRMLEKMGWSSGKGLGAKENGIVEHVVARYKNDDRGLGYEDKNDQW 290
A NNAWS+ F R ++ ++ KG + H + ED +
Sbjct: 290 AANNAWSSPEPIFNNRFIKIFWYNPSKGFHNRPKKFASHKSPTTSDSSNVESSEDVDPAS 349
Query: 291 TKHEDDFNSLL 323
++F+ L+
Sbjct: 350 LLQNEEFHKLI 360
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 319 NELKSSSCFVHWSFLSSYPNPLSSFL 242
N +K S+ F+H LS YP +S+F+
Sbjct: 287 NGIKLSTDFIHKPSLSDYPQTISTFI 312
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 381 EHKSKKSKARVHYHKFTRGKDLTQYSEKDLANIFGKKSLTNDDKPQEKVQDNVK 542
+HK K S + H+HK ++ +++ E D A++ + T P + V + K
Sbjct: 547 QHKQKSSHHKHHHHKKSKSSS-SKHKENDKASVSITTTTTPSITPADPVPTSPK 599
>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
Exg3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 464
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 420 DSAHVLCFSLIYVPGTLHCGVLLQFH 343
+S H+LC I G+L GVLL FH
Sbjct: 114 NSLHILC-EKIQEAGSLSIGVLLDFH 138
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 26.6 bits (56), Expect = 3.7
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +3
Query: 411 VHYHKFTRGKDLTQYSEKDLANIFGKKSLTNDDKPQEKVQDNVKESDQKFTEKGSMEEY 587
V K +RG+DL SE +L ++ S+T+D E++Q ++ F+ + EY
Sbjct: 350 VRISKRSRGRDLRTPSESNLFSLIA--SITSD--INEQIQKRFPDATSPFSGESMFREY 404
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 26.2 bits (55), Expect = 4.9
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +3
Query: 333 SNDNGTEAKLHSGVSLEHKSKKSKARVHY--HKFTRGKDLTQYSEKDLANIFGKKSLTND 506
S+++ + SG + H + +S +H+ H +S D + +K +
Sbjct: 268 SSNSNLKKSSESGSTNHHNNHESDKDLHHEGHHHHHHHHHHHHSHDDDPSSPAEKKQNHV 327
Query: 507 DKPQEKVQDNVKESDQK 557
P EK+QD+V +K
Sbjct: 328 PSPSEKIQDHVPSPSEK 344
>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 572
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 253 SSFLYLATT--CSTIPFSLAPSPFPELHPIFSNI 158
S+FL LA + CS A S FPE HP ++ I
Sbjct: 238 SAFLELANSLNCSVAVMPNAKSFFPESHPNYAGI 271
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.8 bits (54), Expect = 6.5
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Frame = +3
Query: 87 KQKVINLRAKNNAWSND------SGKFGQRMLEKMGWSSGKGLGAKENGIVEHVVARYKN 248
+Q ++NL A+N SN+ +G+FG R S+ + L + + V N
Sbjct: 795 EQTIVNL-AQNFVGSNNINLLMPNGQFGTRSEGGKNASASRYLNTALSPLAR--VLFNSN 851
Query: 249 DDRGLGYEDKNDQWTKHE 302
DD+ L Y++ QW + E
Sbjct: 852 DDQLLNYQNDEGQWIEPE 869
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 6.5
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = -3
Query: 558 IFDRFLLHYPVLFLEVYHHLLSFFYQ-IY*LNPFHYIELNPCRV*IYDSAHVLCFSLIYV 382
I DRF+ V + ++ HH F Y+ IY YI N R ++++ C+ +
Sbjct: 279 IDDRFVPPDRVYYTDIKHHFRKFLYEKIYMNKDGFYITFNNYR----EASN--CYRALDR 332
Query: 381 PGTLHCGVLLQFH 343
+C + L+FH
Sbjct: 333 TYVQNCRIKLKFH 345
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 276 KNDQWTKHEDDFNSLLANLSNDNGTEAKLHSGVSLEHKSKKS 401
K+ +W ++ +N L ++ N + H GVS + KKS
Sbjct: 746 KDREWRSLQNHWNELWHDIEEKNFYRSLDHQGVSFKSVDKKS 787
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +3
Query: 297 HEDDFNSLLANLSNDNGTEAKLHSGVSLEHKSKKSKARVHYHKFTRGKDLTQYSEK 464
HE +F+++ N S+ NGT + +S + S+ S+ ++ F K Q E+
Sbjct: 309 HEREFSTINMNKSSSNGTPDRANSPI----PSQLSENKLTLESFEHRKSFDQVREE 360
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,000,706
Number of Sequences: 5004
Number of extensions: 66166
Number of successful extensions: 255
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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