Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9l18
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               35   7e-04
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    28   0.11 
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   1.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.0  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 35.1 bits (77), Expect = 7e-04
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = +3

Query: 69  LAGPRRKQKVIN---LRAKNNAWSNDSGKFGQRMLEKMGWSSGKGLGAKENGIVEHVVAR 239
           +AG R+K+  +N   +++   +W   +   G ++L +MG+  GKGLG +  GI   V A 
Sbjct: 132 IAGLRKKKHKVNPLLMQSGMGSWEVYTKGIGAKLLLQMGFEPGKGLGKQLQGISTPVEAH 191

Query: 240 YKNDDRGLG 266
            +     +G
Sbjct: 192 LRKGRGAIG 200


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +1

Query: 343 MELKQ-NSTVECPWNINQRKAKHVCTIINSHAARI*LNIVKRI*LIYLVKKA*QMMINLK 519
           ME KQ N    C W +N   + H C   N    +I  +I+  I    L+K     + N+ 
Sbjct: 1   MEFKQPNRPSYCTWELNATNSPHTCRTKNGDYTKIMPDILTAIGQTPLIK-----LNNIP 55

Query: 520 KKYRI 534
           K Y I
Sbjct: 56  KSYGI 60


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 462 KDLANIFGKKSLTNDDKPQEKVQDNVKESDQKFTEKGSM 578
           + L N    K+  NDD  +  +       +QKF E+G M
Sbjct: 285 RSLQNSLNGKNFNNDDDIKSYLIQFFANKNQKFYERGIM 323



 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 243 KNDDRGLGYEDKNDQWTKHE 302
           +N  + LGY  K D W  HE
Sbjct: 101 ENHLKQLGYVQKLDTWVPHE 120


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +3

Query: 357 KLHSGVSLEHKSKKSKARVHYHKFTRG---KDLTQYSE 461
           +++  + LEHK ++++  +H    T+G    DLTQ ++
Sbjct: 145 EMYREMLLEHKKRRARRDIHPELNTQGIALADLTQRAQ 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,911
Number of Sequences: 438
Number of extensions: 4968
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)