Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9l17
(510 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma... 28 0.71
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 27 1.6
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 27 2.2
SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase |S... 26 2.9
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 26 2.9
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 26 3.8
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 26 3.8
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc... 25 5.0
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 25 5.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 6.6
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 25 8.7
>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 387
Score = 28.3 bits (60), Expect = 0.71
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 298 WFWLLSAYLSSVRRY-WDKTIRLWRI 372
W W+LSA LSS + WD I WRI
Sbjct: 289 WLWILSALLSSAYTFLWDVFID-WRI 313
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 27.1 bits (57), Expect = 1.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 302 NHDEHWYNQINQQRQDSTEQPPQTNHHQETGQH 204
N ++HWY+ +D Q NH+ E+G H
Sbjct: 373 NFEQHWYDA-----EDYESTTSQLNHYSESGAH 400
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Frame = -2
Query: 299 HD--EHWYNQINQQRQDSTEQPPQT---NHHQETGQ 207
HD E W Q +Q D++ +PP T N+ Q TG+
Sbjct: 8 HDLSEEWIPQPQEQGSDNSSEPPTTSNVNNTQSTGR 43
>SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 204
Score = 26.2 bits (55), Expect = 2.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 268 NNVRTARSSHHRPITTRKLAN 206
N T S+H R +TTR+LAN
Sbjct: 92 NGTTTGISAHDRALTTRQLAN 112
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 26.2 bits (55), Expect = 2.9
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 496 PNSTSLFQTTFPTIP 452
PNST+ TTFP++P
Sbjct: 195 PNSTNFASTTFPSVP 209
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 25.8 bits (54), Expect = 3.8
Identities = 20/50 (40%), Positives = 20/50 (40%)
Frame = -1
Query: 318 RRQQPKPRRALV*SN*PTTSGQHGAATTDQSPPGNWPTSPAPPRVQLATP 169
R P PRRA P S AA PP PAP RVQ A P
Sbjct: 5 RSAAPPPRRAA-----PARSASTAAAL----PPRTMAPPPAPSRVQQAPP 45
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 25.8 bits (54), Expect = 3.8
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = -3
Query: 430 QQINHVLIFSAIFINILRNRFARA 359
Q ++ V+IF+++F++I RN+ + A
Sbjct: 84 QHLSSVVIFASVFVSIYRNQLSCA 107
>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
Lag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 5.0
Identities = 9/29 (31%), Positives = 13/29 (44%)
Frame = +1
Query: 301 FWLLSAYLSSVRRYWDKTIRLWRIYCEVY 387
FW L Y+ YW +L+ Y + Y
Sbjct: 168 FWFLGLYIYRSSNYWSNEEKLFEDYPQYY 196
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 25.4 bits (53), Expect = 5.0
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +1
Query: 343 WDKTIRLWRIY 375
WDKT+R+W I+
Sbjct: 487 WDKTVRIWDIF 497
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 6.6
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = -1
Query: 369 SPEPDSFVPIAAHGAEVRRQQPK-PRR 292
S P SF P A H V + PK P R
Sbjct: 215 SSRPSSFAPPAGHAPNVTSESPKFPNR 241
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 24.6 bits (51), Expect = 8.7
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 343 WDKTIRLW 366
WDKTIRLW
Sbjct: 83 WDKTIRLW 90
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,948,479
Number of Sequences: 5004
Number of extensions: 38153
Number of successful extensions: 129
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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