Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9l17
(510 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 35 0.044
03_01_0019 + 167900-168343,168567-168751,169076-169430 32 0.23
04_03_0239 + 13205509-13206090 30 0.94
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 28 5.0
08_02_1311 - 26039741-26039930,26040185-26040316,26040528-260406... 27 6.6
08_01_0421 - 3735155-3736067,3736154-3736176 27 6.6
06_03_1008 + 26873805-26873891,26874038-26874107,26874237-268743... 27 6.6
07_01_0741 - 5651773-5651880,5651987-5652055,5652233-5652280,565... 27 8.8
05_07_0350 - 29457444-29457871,29458786-29461456 27 8.8
02_01_0035 - 220036-221419,222050-222801 27 8.8
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 34.7 bits (76), Expect = 0.044
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Frame = -1
Query: 360 PDSFVPIAAHGAEVRRQQPKPRRALV*SN*PTTSGQHGAATTDQSPPGNWPTSP---APP 190
P+ P+ A + VR P P + P + H A T PP P P AP
Sbjct: 114 PEELSPVGAPRSRVRAMPPSPSLSP-----PAKAPSHSHAKTPSMPPAERPALPPTKAPA 168
Query: 189 RVQLATP*RN*PCHSHS 139
+ ATP + P ++HS
Sbjct: 169 AISPATPPQLSPANAHS 185
>03_01_0019 + 167900-168343,168567-168751,169076-169430
Length = 327
Score = 32.3 bits (70), Expect = 0.23
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -1
Query: 342 IAAHGAEVRRQQPKPRRALV*SN*PTTSGQHGAATTDQSPPGNWPTSPAPP 190
+AAHG + +PKP + N ++S + + + P PT+P PP
Sbjct: 23 LAAHGCSAKHHKPKPTPGGISGN-ASSSSSNSSTPSIPPPVAPTPTAPTPP 72
>04_03_0239 + 13205509-13206090
Length = 193
Score = 30.3 bits (65), Expect = 0.94
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +2
Query: 170 GVAN*TRGGAGDVGQFPGGDWSVVAAPC 253
G A+ RGG+G QF GG VVAA C
Sbjct: 38 GRADPVRGGSGGADQFRGGGDDVVAARC 65
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Frame = -2
Query: 434 FPTNKSRFDIFRHFHQYTSQ*IRQSRIVLSQ*RRTEL--RYADNSQNHDEHWYNQINQQR 261
FP ++ ++ H + Q Q+RI R+ + ++ ++QNH + Y Q QQ
Sbjct: 144 FPLQQNHHQQYQQ-HHHQQQYEHQNRIHFQHHRQQQQYQQHQHHNQNHHQQQYQQQQQQY 202
Query: 260 QDSTEQPPQTNHHQETGQHH 201
Q Q Q Q +
Sbjct: 203 QHQNLQQQYQQQQQNLQQQY 222
>08_02_1311 -
26039741-26039930,26040185-26040316,26040528-26040676,
26040807-26040893,26041338-26041420,26042008-26042137
Length = 256
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 311 CLRTSAPCAAIGTKLSGSGESIAKYIDENGGKYQNVIYLLEK 436
CL++S + + LSGSG++I Y +G +Q + +E+
Sbjct: 46 CLKSSKANTIVLSGLSGSGKTILFYQLRDGSTHQGTVTSMEQ 87
>08_01_0421 - 3735155-3736067,3736154-3736176
Length = 311
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 252 HGAATTDQSPPGNWPTSPAPPRVQLATP*R 163
HG + D S P + PTSP P + + ATP R
Sbjct: 7 HGVQSGD-SKPSSPPTSPPPAQARHATPRR 35
>06_03_1008 +
26873805-26873891,26874038-26874107,26874237-26874334,
26874505-26874643,26874778-26874860,26875145-26875195,
26875305-26875370,26875465-26875530,26875637-26875717,
26876042-26876119,26876218-26876394,26876467-26876545,
26876752-26876870,26877029-26877430
Length = 531
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 284 YNQINQQRQDSTEQPPQTNHHQETGQH 204
Y QI QQ+Q T PPQT H Q+ Q+
Sbjct: 471 YYQIQQQQQMVT-LPPQTYHQQQQTQY 496
>07_01_0741 -
5651773-5651880,5651987-5652055,5652233-5652280,
5652487-5652657,5652746-5652899,5653720-5653797,
5654165-5654208,5654505-5654604,5655621-5655775
Length = 308
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 51 NFSEKKMDHITRKCLHR*LFSMPPLSSSERNDCGTVNFFKAWL 179
++ E++ D I KCL ++ PL + R + + ++KA L
Sbjct: 255 SYDEEEGDDIDHKCLVDGYITVTPLGALSRAEADVIPYYKACL 297
>05_07_0350 - 29457444-29457871,29458786-29461456
Length = 1032
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Frame = +2
Query: 188 RGGAGDV--GQFPGGDWSVV 241
RGGAG V G+ PGG+W V
Sbjct: 718 RGGAGVVYAGEMPGGEWVAV 737
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 299 HDEHWYNQINQQRQDSTEQPPQTNHHQETGQHHLRL 192
H++H + + QQ PQ +HH HHL L
Sbjct: 112 HEQHHHQKHQQQPPPPARWAPQHHHHHHP-HHHLGL 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,117,903
Number of Sequences: 37544
Number of extensions: 291224
Number of successful extensions: 1197
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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