Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9l13
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    97   2e-21
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    93   4e-20
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    56   3e-09
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    56   6e-09
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    28   1.3  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    27   3.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   4.0  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    26   5.3  
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|...    26   5.3  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    25   9.3  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   9.3  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.3  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 43/75 (57%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
 Frame = +2

Query: 77  MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL----AFPDNDNSCGHFFSETGAGK 244
           M+EI+ IH+GQAG Q  NACWELYCLEHGI+P+G +    A  ++D     FFSETG GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 245 FVPRVVMIDLEPTPI 289
           +VPR + +DLEP  I
Sbjct: 61  YVPRSIYVDLEPNVI 75



 Score = 89.8 bits (213), Expect = 3e-19
 Identities = 43/104 (41%), Positives = 65/104 (62%)
 Frame = +3

Query: 330 YVDLVLEKNTTAYEIRTGVYRQLFHSSSLITGKEDAASNFARGYFGVGREMLDVALNRIR 509
           YVDL  E N    ++RTG YR LFH   LITGKEDA++N+ARG++ VG+E++D   ++IR
Sbjct: 67  YVDL--EPNVID-QVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIR 123

Query: 510 SVTEDCDNIQGFIVFRXXXXXXXXXXXXXXLESISRDFGKLSKI 641
            + ++C  +QGF+VF               LE ++ ++ K SK+
Sbjct: 124 RIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKL 167


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 92.7 bits (220), Expect = 4e-20
 Identities = 44/79 (55%), Positives = 54/79 (68%), Gaps = 8/79 (10%)
 Frame = +2

Query: 77  MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGV-----LAFPDN---DNSCGHFFSET 232
           M+E++ +H+GQAGVQ  NACWELYCLEHGI PDG          +N   ++  G FFSET
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 233 GAGKFVPRVVMIDLEPTPI 289
           G GKFVPR + +DLEP  I
Sbjct: 61  GQGKFVPRSIYVDLEPNVI 79



 Score = 92.3 bits (219), Expect = 5e-20
 Identities = 43/104 (41%), Positives = 65/104 (62%)
 Frame = +3

Query: 330 YVDLVLEKNTTAYEIRTGVYRQLFHSSSLITGKEDAASNFARGYFGVGREMLDVALNRIR 509
           YVDL  E N    ++RTG Y+ LFH   ++TGKEDA++N+ARG++ VG+EM+D  L RIR
Sbjct: 71  YVDL--EPNVID-QVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIR 127

Query: 510 SVTEDCDNIQGFIVFRXXXXXXXXXXXXXXLESISRDFGKLSKI 641
            + ++C  +QGF+VF               LE ++ ++GK S +
Sbjct: 128 RMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNL 171


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
 Frame = +2

Query: 80  KEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL-AF-PDNDNSCGHFFSETGAGKFVP 253
           +EI+ +  GQ G Q  +  W+  CLEHGI PDG L +F  +  +    FF ++   +++P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 254 RVVMIDLEP 280
           R ++IDLEP
Sbjct: 63  RAILIDLEP 71


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 55.6 bits (128), Expect = 6e-09
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +2

Query: 77  MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL--AFPDNDNSCGHFFSETGAGKFV 250
           M+EI+HI  GQ G Q   A W     EHG+   G+              +F+E   GK+V
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 251 PRVVMIDLEP 280
           PR V++DLEP
Sbjct: 61  PRAVLVDLEP 70



 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 19/58 (32%), Positives = 35/58 (60%)
 Frame = +3

Query: 372 IRTGVYRQLFHSSSLITGKEDAASNFARGYFGVGREMLDVALNRIRSVTEDCDNIQGF 545
           +++G +  LF   ++I G+  A + +A+G++  G E+ D  L+ +R   E CD +QGF
Sbjct: 76  VKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGF 133


>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = +3

Query: 324 LEYVDLVLEKNTTAYEIRTGVYRQLFHSSSLITGKEDAASNFARGYFGVGREMLDVALNR 503
           ++Y D V+ K  T Y +       L  ++SL      AAS+  +G+      +L VALNR
Sbjct: 176 IDYPDFVIPK--TGYLVPWADQGILMLNASLTVRAHQAASHSGKGWETFTSAVLQVALNR 233

Query: 504 IR 509
            R
Sbjct: 234 NR 235


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = -2

Query: 628 FPKSREILSRSKAVKPEPVPPPNARNTIKP*ILSQSSVTDRMRFKATSNISRPTPK*PRA 449
           FP +   L    AVK +P PPP  +N   P   + SS    M+++ T+   +  P  P  
Sbjct: 189 FPSNYVRLLEDSAVKAQPPPPPPQQN-YPP---AASSSAPPMQYQQTAYPPQQAPYPPVQ 244

Query: 448 KLLAASSLPVI 416
               A   P++
Sbjct: 245 AYPQAPQQPIV 255


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 586 KPEPVPPPNARNTIKP*ILSQSS 518
           +P P PPP+ RN  KP I + SS
Sbjct: 310 RPPPPPPPSRRNRGKPPIGNGSS 332


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 96  YTLDKPVCKPLTPVGNCIVLNT 161
           Y LD  + + +TP   CIVLNT
Sbjct: 96  YNLDTAIKEVVTPGHTCIVLNT 117


>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 162

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -2

Query: 532 LSQSSVTDRMRFKATSNI--SRPTPK*PRAKLLAASSLPVIREEEWKS 395
           L +S+ TD  R+    N    R   +  + +L    ++  I+EEEWKS
Sbjct: 26  LQESTETDTSRYMDMENYIQKRVQDELKQLQLRQKKAIDAIQEEEWKS 73


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 533 YSGLYCISSVWRGNRFWFHSFTSG 604
           Y+   C+++V R NRFW      G
Sbjct: 747 YNENVCVAAVLRNNRFWIEVLEFG 770


>SPAC2F7.03c |pom1||DYRK family protein kinase
            Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 116  HRLVQCVCVEFLSFSINHCKFW 51
            H+++QC  V FLSF I+ C  W
Sbjct: 958  HQVLQCKDVSFLSF-ISDCLKW 978


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 142 FPTGVSGLHTGLSNVYV*NFFHFQLITVNFGFYHILFNLQSN 17
           FP  +  L++G    Y  NFF   L  +  G+YH L N  SN
Sbjct: 249 FPKKIRLLYSGN---YQGNFFPLFLSILCVGYYHHLLNNPSN 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,117
Number of Sequences: 5004
Number of extensions: 57624
Number of successful extensions: 177
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)