Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9l08
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    28   1.5  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    26   4.5  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    26   4.5  

>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +2

Query: 296 FVHCDNVGIDSIELFFKRPSH*EWVI*IVSRFN---IYISQQYR*IRYRPAPN 445
           FV C++ GI S +L+ K+  H  WV       N    ++   Y+ + + P PN
Sbjct: 557 FVFCNSFGISSSKLYIKKMIHLIWVKGTSDEGNNIQNHVLSCYKTLFFEPPPN 609


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 199 MIPCSIHLDHVVSTHK 246
           MIP SIH DH++  H+
Sbjct: 119 MIPASIHCDHLIVGHR 134


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 439 CGAISDSTILLRYIDIESRYDLYHPLLMRRPFKK 338
           C  I+D++  L Y + +SRY L   ++   P+K+
Sbjct: 373 CADINDNSSYLIYKNYDSRYPLIDEVIQPGPYKE 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,371
Number of Sequences: 5004
Number of extensions: 56332
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)