Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9l07
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    35   0.009
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    29   0.76 
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    27   1.8  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    27   3.1  
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...    26   4.0  
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    26   5.3  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    25   7.1  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   7.1  

>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +2

Query: 104 REYKSGDFIFAKVKGYPAWPARV 172
           + YK+G+++ AK+  +P WPARV
Sbjct: 59  KSYKNGEYVLAKMSSFPWWPARV 81


>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 179 LNGKKYFVYFYGTGEIANLPPNMIFDYAENKDKFLTKTV 295
           L+G+ +F Y YG   + +L  + +      K+ F T+TV
Sbjct: 111 LHGRSHFGYIYGIALLGSLSLHFVLRLMSAKNLFFTRTV 149


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 119 GDFIFAKVKGYPAWPARVQR 178
           GD I  K  GYP WPA + R
Sbjct: 53  GDRILVKAPGYPWWPALLLR 72


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 86  KMGKKVREYKSGDFIFAKVKGYPAWPARV 172
           K  ++V  YK G  +  K+ G+P WP+ V
Sbjct: 116 KQSERVN-YKPGMRVLTKMSGFPWWPSMV 143


>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +2

Query: 122 DFIFAKVKGYPAWPARVQRLNGKKYFVYFYGTGEIANLPPNMIFDYA 262
           D+I++ + GY   PA V+  +G  +  +F GT +IA   P  +FD A
Sbjct: 190 DYIYSLLTGYTEPPAGVEVPDGMNFNPFFPGT-QIAMARP--LFDDA 233


>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/50 (24%), Positives = 21/50 (42%)
 Frame = +2

Query: 209 YGTGEIANLPPNMIFDYAENKDKFLTKTVKRRDFNDGVKQIEHDFANNVP 358
           Y +   + LP N    Y  N D  +    +  + N+    + HD +N+ P
Sbjct: 40  YNSENESGLPSNSASSYLINPDPTMDLEAQTFNHNESTTSVGHDNSNSPP 89


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -2

Query: 132 NIKSPDLYSLTFLPIFSITMPLPPC-SMLSLHNTY 31
           N++ PDL     L +F ++   PPC SM+     Y
Sbjct: 50  NLRFPDLQCSVCLNMFHLSCLSPPCTSMMGFSTNY 84


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 581 RKSKAESVKTPAKPVKEPK 637
           R++K  SVK  A P+K+PK
Sbjct: 133 RENKNSSVKETAAPIKQPK 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,928
Number of Sequences: 5004
Number of extensions: 46128
Number of successful extensions: 122
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)