Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9l01
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0093 + 13330867-13332312 33 0.19
03_05_0407 - 23906388-23906966,23907028-23907915,23908141-239087... 30 1.7
08_01_0623 - 5435075-5435381,5435461-5435844,5436240-5436571 29 3.0
06_02_0008 - 10552066-10552116,10552224-10552323,10552394-105524... 28 7.0
03_01_0107 + 849489-850652,850745-850835,850926-851083,851180-85... 28 7.0
12_02_0803 + 23318429-23318552,23318688-23319877,23320724-233215... 28 9.3
03_06_0525 + 34511025-34512168,34512710-34512886,34513131-34513447 28 9.3
02_02_0663 - 12740733-12741104,12741260-12741326,12741709-127418... 28 9.3
>07_03_0093 + 13330867-13332312
Length = 481
Score = 33.5 bits (73), Expect = 0.19
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Frame = +2
Query: 353 ENAYESSESDEDNEILTAKLVQELKVREVQGSG-DQALSVLDLSWSNTGNSLAVSLGQKQ 529
E+A +S + ++ + V E+ +EV G+ + A+ LSW N L L
Sbjct: 231 ESARRNSSAVVTFDMNSLSPVAEIGRKEVYGADVEAAIPASRLSWLGRHNLL---LAAGS 287
Query: 530 HENWCTDNGLIRFYTVKVSAGDKLVHSMDINEK-NCVSVLKYHPSVAALFVYGTVTGEIV 706
H G I + V+ SA V ++ EK +C + + ++++LF G +GE+
Sbjct: 288 HSGPAGVVGDICLWDVRASA---TVPVWELREKEDCFADIAASEALSSLFKVGAASGEVF 344
Query: 707 ICDLR 721
+ DLR
Sbjct: 345 MADLR 349
>03_05_0407 -
23906388-23906966,23907028-23907915,23908141-23908753,
23908858-23909021
Length = 747
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +2
Query: 362 YESSESDEDNEILTAKLVQELKVREVQGSGDQALSVLDLSWSNTGNSLAVSLGQKQHENW 541
Y+S + D+D+E+ TA+ V+ KV Q + L +T S A LG++++ W
Sbjct: 520 YKSDDDDDDSEVATAEWVRSKKVIPCQWVKSSGKREIQLPAGHTIPS-AEELGKRRYCKW 578
>08_01_0623 - 5435075-5435381,5435461-5435844,5436240-5436571
Length = 340
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Frame = +2
Query: 341 DENKENAYESSESDEDNEILTAKLVQELKVREVQGSGDQALSVLDLSWSN-TGNSLAVSL 517
DE KE+ E + DE E + L +L +S +N T ++
Sbjct: 184 DEMKEHHNEDEDDDEYEEPFEQWEARRNVDAFAIAENMHELRLLQISGNNLTNKGVSELA 243
Query: 518 GQKQHENWCTDNGLIRFYTVKVSAG 592
Q+ + + C DNGL+ + VS G
Sbjct: 244 AQRSNMSGCLDNGLMLTVQISVSLG 268
>06_02_0008 -
10552066-10552116,10552224-10552323,10552394-10552449,
10553950-10557180
Length = 1145
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +2
Query: 254 DLTTKDVKYSAANLNAFLQRVMPGMLEQLDENKENAYESSESDEDNEILTAK--LVQELK 427
D +T+DVK + N ++ +P M QL + K+N ++ ++ + K L +++
Sbjct: 468 DQSTEDVKSAPTNDLESIKDSIPNMANQLHDQKDNLAIATVHSSSADVPSRKGPLPEQVL 527
Query: 428 VREVQGSGDQALS 466
+ GD+ +S
Sbjct: 528 SEPISALGDRTVS 540
>03_01_0107 +
849489-850652,850745-850835,850926-851083,851180-851231,
852373-852452,852540-852633,852711-853231,854087-854202,
854242-854293
Length = 775
Score = 28.3 bits (60), Expect = 7.0
Identities = 29/107 (27%), Positives = 50/107 (46%)
Frame = +2
Query: 401 TAKLVQELKVREVQGSGDQALSVLDLSWSNTGNSLAVSLGQKQHENWCTDNGLIRFYTVK 580
T L QE V E G D ++LDLSWS + L+ S+ + +R + V
Sbjct: 361 TFALSQE-PVHEFYGHDD---AILDLSWSKNRDLLSSSMDKT-----------VRLWQVG 405
Query: 581 VSAGDKLVHSMDINEKNCVSVLKYHPSVAALFVYGTVTGEIVICDLR 721
++ K+ + N V+ +++HP+ F+ G + G + I D+R
Sbjct: 406 CNSCLKV-----FSHTNYVTCVQFHPTSDNYFISGCIDGLVRIWDVR 447
>12_02_0803 + 23318429-23318552,23318688-23319877,23320724-23321528,
23321938-23322417,23322535-23322815,23323207-23323302,
23323423-23323548,23324100-23325890
Length = 1630
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 305 LQRVMPGMLEQLDENKENAYESSESDEDNEILTAKLVQELKVREVQGSGDQAL 463
+QRV+P L ++ S+ D D ++L +++ K + VQGS D L
Sbjct: 923 VQRVLPSDAPSLQAGDDS---SANFDRDRQLLNLRMLDSRKNKIVQGSVDAEL 972
>03_06_0525 + 34511025-34512168,34512710-34512886,34513131-34513447
Length = 545
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 229 FIDDLSYRGFDDKRRKIFGSQFKCVPPKSNAGYA*AAR 342
++D GF+D R +IFGS P +G+A AR
Sbjct: 108 YVDSDPGHGFEDIREQIFGSADTSAVPAPMSGFAQNAR 145
>02_02_0663 -
12740733-12741104,12741260-12741326,12741709-12741809,
12741852-12742273,12743678-12743685,12745164-12745396
Length = 400
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 623 EKNCVSVLKYHPSVAALFVYGTVTGEIVICDLRN 724
E V V+K++PS + LF+ G G + + D+R+
Sbjct: 132 EDQAVEVIKFNPSNSNLFLSGGSKGSLRLWDIRS 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,432,463
Number of Sequences: 37544
Number of extensions: 359062
Number of successful extensions: 1113
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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