Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9k24
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    77   2e-15
SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Ma...    29   0.57 
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    28   0.99 
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    27   2.3  
SPAC31G5.07 |||conjugation protein |Schizosaccharomyces pombe|ch...    25   7.0  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.0  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   7.0  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   9.2  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   9.2  

>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 77.0 bits (181), Expect = 2e-15
 Identities = 36/119 (30%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
 Frame = +2

Query: 230 IFLGEFHPVAGPKISCQFPEDYISKE--------VFDSISAYIIPKPQIQKCTMTINALG 385
           IF   F P+ GP ++C+ P   ++           F++IS Y+IPK ++   T+T+    
Sbjct: 22  IFFALFDPLQGPIVACEAPAGSVTNVDGGKNCLLPFETISDYVIPKRELCNKTITVCTNH 81

Query: 386 HKIVGYPIRIDNPRYERNVYLFNICFVCDSWSKTVQYEPVVKKLGEHLTIMEEETGFVS 562
           ++++G+PI I    YERN  +FN+C +      +  Y P+VK+L  +L ++E++  ++S
Sbjct: 82  YQVIGHPISIIGSNYERNALIFNMCMIFHEEEDSACYIPLVKRLARNLEVLEKQIHYIS 140


>SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 603 RRCASKVGSLDDPLDTNPVSS-SIIVKCSPSFLTTGSYCTVLDQL 472
           RR  +K G+++ PL+ NP  S + +V C    +TT      +DQL
Sbjct: 93  RRINTKYGAVNVPLEINPFKSWAKLVDCGDIPVTTYDILKAMDQL 137


>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +2

Query: 140 SLEPNLDLVSSKIMETRYYEGCGREGPIRCIFLGEFHPVAGPKISCQFPED 292
           ++EP+ ++    I+ETR+  G   + PIR     EF  +    +   +P++
Sbjct: 35  AIEPD-NIAGESIVETRFTGGDSLDEPIRVTLFNEFRAIGEKLVYVLYPKN 84


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 248 HPVAGPKISCQFPEDYISKEVFDSISAYIIPKPQIQKCTMTI 373
           H    P+I     E Y+++E FDSI+  ++P    +K   TI
Sbjct: 788 HSDVVPEIIELMDEYYLNREDFDSITELVLPADAGEKLMKTI 829


>SPAC31G5.07 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = -1

Query: 375 FMVIVHFCICGLGMMYALIES 313
           +M++  FC+CG+  +  ++ S
Sbjct: 98  WMIVFSFCVCGVSFLMGVVSS 118


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 8/36 (22%), Positives = 19/36 (52%)
 Frame = +2

Query: 290 DYISKEVFDSISAYIIPKPQIQKCTMTINALGHKIV 397
           ++    +    +A+ +P+PQ+  C M +N    K++
Sbjct: 593 NFFGSAIITPTTAHGVPQPQLPNCGMKLNRTKEKLL 628


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 248 HPVAGPKISCQFPEDY 295
           HP+ GP+  C   EDY
Sbjct: 218 HPIVGPRFHCLVCEDY 233


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 440  HYVHIWGCLCELDTQQFCALVHLWS*CIFVFV 345
            H    WG L      + C  +HLW+  +F++V
Sbjct: 1331 HLKLFWGRLNMAKVIRACDQMHLWNEAVFLYV 1362


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 16  FIYDNTAILFNNCF 57
           F+YDN  +LF+ C+
Sbjct: 561 FVYDNEIVLFDTCY 574


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,862,153
Number of Sequences: 5004
Number of extensions: 64334
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)