Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9k24
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230...    31   0.58 
06_03_0599 + 22632625-22633030,22634733-22636724,22636819-22637171     29   4.1  
05_05_0334 + 24156532-24156565,24156681-24156782,24157145-241572...    29   4.1  
11_03_0168 - 11099991-11100163,11100242-11100334,11101241-11101442     28   7.2  
07_03_0399 + 17714058-17714163,17714282-17714406,17714868-177149...    28   7.2  
05_03_0549 - 15349259-15349346,15349466-15349585,15349899-153500...    28   7.2  
01_06_1327 + 36337578-36337976,36338068-36338397,36338523-363386...    27   9.5  

>08_01_0283 -
           2304024-2304111,2304224-2304343,2304594-2304715,
           2304824-2305096,2305454-2305558,2305635-2305851,
           2306012-2306262,2306518-2306724,2307087-2307351,
           2308655-2308749
          Length = 580

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 197 EGCGREGPIRCIFLGEFHPVAGPKISCQFPEDYIS 301
           EG  R  P R   LG+F P+ G + + Q P D+IS
Sbjct: 503 EGRHRFRPFRYRHLGQFAPLGGEQTAAQLPGDWIS 537


>06_03_0599 + 22632625-22633030,22634733-22636724,22636819-22637171
          Length = 916

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 455 ICFVCDSWSKTVQYEPVVKKLGEHLTIMEEE 547
           +C     W+K +Q EP V++L EH  I  E+
Sbjct: 564 LCLAKYIWTKRMQAEPHVQQLNEHRNITYED 594


>05_05_0334 +
           24156532-24156565,24156681-24156782,24157145-24157274,
           24157361-24157445,24157525-24157666,24157762-24157894,
           24157993-24158254,24158331-24158519,24158596-24158721,
           24158809-24159195,24159288-24159398,24159629-24160423,
           24161114-24161255,24161350-24162518,24162609-24162818,
           24163010-24163478,24164037-24164464
          Length = 1637

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 446 LFNICFVCDSWSKTVQYEPVVKKLGEHLTIME-EETGFVSSG 568
           L++IC     W    Q+    ++LG HLT+ +  E G + SG
Sbjct: 497 LYSICHKAGLWQVANQFGRSAEQLGHHLTLTKIPEAGELDSG 538


>11_03_0168 - 11099991-11100163,11100242-11100334,11101241-11101442
          Length = 155

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 345 GLGMMYALIESKTSFEI*SSGNWHEIFGPATGWNSPRNIHRI 220
           GLGM  A   ++ S E    G+W ++      W   RN HRI
Sbjct: 43  GLGMEEARQGARGSKETIKDGDWRDVL----AWTEERNTHRI 80


>07_03_0399 +
           17714058-17714163,17714282-17714406,17714868-17714983,
           17715058-17715151,17715255-17715319,17716295-17716400,
           17716776-17716805,17716877-17716990,17717741-17717803
          Length = 272

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 251 PVAGPKISCQFPED--YISKEVFDSISAYIIPKPQIQKCTMTIN 376
           P A PK   + P    YIS E  DS+S+Y+  +  ++K  + IN
Sbjct: 142 PTAPPKKKGRGPAPRWYISTEELDSLSSYMRGRLTLEKVNIAIN 185


>05_03_0549 -
           15349259-15349346,15349466-15349585,15349899-15350020,
           15350511-15350783,15351398-15351502,15351588-15351804,
           15352031-15352281,15352582-15352776,15352881-15353139,
           15354617-15354714
          Length = 575

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 200 GCGREGPIRCIFLGEFHPVAGPKISCQFPEDYI 298
           G  R  P R   LG+F P+ G + + Q P D+I
Sbjct: 499 GRHRFKPFRYRHLGQFAPLGGEQTAAQLPGDWI 531


>01_06_1327 +
           36337578-36337976,36338068-36338397,36338523-36338628,
           36338722-36339104
          Length = 405

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 259 RPKDFMPVPGRLYFKRSFRFNKCIHHS*TTNTKMH 363
           RP DF+P  G+ +F   F  + C H + T   +MH
Sbjct: 110 RP-DFLPASGKFHFYGVFDGHGCSHVATTCQDRMH 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,298,160
Number of Sequences: 37544
Number of extensions: 407444
Number of successful extensions: 1029
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)