Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9k21
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   2.9  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    26   3.8  
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    26   5.1  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   6.7  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    25   6.7  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   8.8  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.8  

>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -1

Query: 574 LPLQPYPNRPSALALWPLTLNA*RLL*YTMSRHLNRLYSRFCHAAQRRPF 425
           +PL   P     LALW   +N    L  T SR + R Y  +    Q+  F
Sbjct: 431 VPLSTVPAWQETLALWASDMNCISYLGNTTSRQVIRDYEFYVDGTQKIKF 480


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = +3

Query: 21  ISCSLFWEKMNKF*LIL 71
           I+ +LFW+KMNK+ +I+
Sbjct: 441 ITLTLFWKKMNKYGMII 457


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 270 HHDADLMRGDVDVKFIQFYEPHLSY 196
           HH + +       K +QFYE HL++
Sbjct: 300 HHPSTITNKKCPQKMLQFYESHLTF 324


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 258 DLMR-GDVDVKFIQFYEPHLSYVLRRM 181
           DL R G +  K IQ YE HL Y+L+ M
Sbjct: 144 DLFRQGAILNKVIQVYESHLPYLLQFM 170


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 403 RPRVPQRAPFRSTVARRLLCTPDAPLAKPAPTSGNRQ 293
           RPR+P+ A    T   +L  TP AP   P P+S   Q
Sbjct: 543 RPRLPRVASPLKTSPVKLAVTPQAP--SPLPSSNPSQ 577


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 334 APLAKPAPTSGNRQRVRRSAP 272
           AP+A P+  SGNR   R  AP
Sbjct: 94  APIAPPSSASGNRSYSRPFAP 114


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 374 SVNSCAAPSLYPGCASSKARTDVGQSSAS 288
           S N  +APSLY   A+S AR  +  + AS
Sbjct: 190 SNNKKSAPSLYAAAAASAARHSMSAAYAS 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,513
Number of Sequences: 5004
Number of extensions: 53752
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)