Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9k20
         (347 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    29   0.16 
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    26   1.5  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   2.5  
SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb...    24   5.9  
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   7.8  
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c...    24   7.8  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    24   7.8  

>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 29.5 bits (63), Expect = 0.16
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
 Frame = +1

Query: 4   ILVLLLIISPMNSFKSPKELNREIQKL--ENNKYTTSDVLVGKAMDFIYSNKTVMGLLAR 177
           I ++LL +    +  +P++L    +KL   + K   SDV++     F+  N  V+G L  
Sbjct: 267 ICIVLLFLGRAVNILAPRQLGVLTEKLTKHSEKIPWSDVILFVIYRFLQGNMGVIGSLRS 326

Query: 178 ELWNLGSSAIDRIVEMKGRKNKNQ*SIPLHATR 276
            LW   S    R +  K  ++    S   H  +
Sbjct: 327 FLWVPVSQYAYRAISTKALRHVLNLSYDFHLNK 359


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
 Frame = +1

Query: 46  KSPKELNREIQKLENNKYTTS--DVLVG--KAMDFIYSNKTVMGLLARELWNLGSSAIDR 213
           KS +E+++++      ++  S  D  +   K ++F+ SNK  +GL  R++   G + + R
Sbjct: 200 KSSEEISKDMGSYNLPRFLASLIDASLNDTKEIEFVTSNKEELGLEGRDMSTSGINQLSR 259

Query: 214 IVEMK 228
           +  ++
Sbjct: 260 LARVE 264


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +1

Query: 4   ILVLLLIISPMNSFKSPKELNREIQKLENNKYTTSDV---LVGKAMDFIYS 147
           I  LL +I+P  S   P  + RE+   + N   T+D+   L G A D  YS
Sbjct: 10  IFSLLFVINPCYSATLPLAIRRELTWGQVNILHTTDIHGWLAGHARDKRYS 60


>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 209

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +1

Query: 40  SFKSPKELNREIQKLENNKYTTSDVLVGKAMDFI---YSNKTVM 162
           S    +E++R +   + N Y   D+L G ++D I   Y  K++M
Sbjct: 14  SLNRGREIDRILSSFKLNAYDVLDILPGMSVDDIRNLYRKKSLM 57


>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 281 CSLVACNGMLHW 246
           C+L+ C GMLH+
Sbjct: 154 CALILCKGMLHF 165


>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 143

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +3

Query: 252 KHSIACDKRAIRVIYYF 302
           KH+  C ++ +R++Y+F
Sbjct: 62  KHTCRCFQQVVRIVYWF 78


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 151 KTVMGLLARELWNLGSSAIDRIVEM 225
           K +  +++R  WNL    ID I+E+
Sbjct: 334 KGLAKIISRLPWNLAEQVIDAIIEL 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,209,099
Number of Sequences: 5004
Number of extensions: 20424
Number of successful extensions: 62
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)