Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9k20
         (347 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0022 - 40543912-40544004,40545060-40545229,40545850-405459...    28   1.8  
09_04_0165 + 15274448-15277336                                         27   4.0  
06_03_0256 - 18841627-18841993,18842087-18842415,18842512-188427...    26   9.3  

>01_07_0022 -
           40543912-40544004,40545060-40545229,40545850-40545971,
           40549272-40550909,40553212-40553720
          Length = 843

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +1

Query: 34  MNSFKSPKELNREIQKLENNKYTTSD---VLVGKAMDFIYSNKTVMGLLARELWNLGSSA 204
           MN+  SP+ L +++ KL N++ T  +    L+  A D + ++K   G    E W +  +A
Sbjct: 735 MNAGFSPQILAQKLLKLNNSRQTPRERRVSLLYLANDIVQNSKKDSGRYVNEFWRVIPAA 794

Query: 205 IDRI 216
           ++ +
Sbjct: 795 LNDV 798


>09_04_0165 + 15274448-15277336
          Length = 962

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 136 NPLPSQPKHPKLCIYCSLASEF 71
           N +P    HP L IYCS+   F
Sbjct: 600 NQMPKSATHPNLRIYCSMIDVF 621


>06_03_0256 -
           18841627-18841993,18842087-18842415,18842512-18842749,
           18844091-18844373,18844773-18844989,18845067-18845360
          Length = 575

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 133 PLPSQPKHPKLCIYCSLASEF 71
           P P QP HP L  Y + AS F
Sbjct: 223 PAPPQPPHPLLYAYGAAASAF 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,242,370
Number of Sequences: 37544
Number of extensions: 119493
Number of successful extensions: 277
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)