Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9k18
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0190 - 26260743-26261198,26261261-26261355,26261425-26262181     30   1.6  
11_02_0056 + 7828453-7828717,7829425-7829427,7829658-7829912,782...    30   2.1  
07_01_0756 + 5819367-5820038,5820847-5821005                           29   3.6  
03_06_0386 + 33555682-33556344,33557138-33557299                       29   3.6  
05_05_0005 + 21442819-21442916,21443053-21443119,21443226-214432...    29   4.8  

>05_06_0190 - 26260743-26261198,26261261-26261355,26261425-26262181
          Length = 435

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 129 CEDE--KEYRSVVLWLEDQKIRHYKIEDREGLRNIDSDFWKEAY 254
           C DE  K + S++L+    +++H  +       ++D D WKE Y
Sbjct: 221 CRDERVKSHFSLILFYNGDELKHETVATFRDRCDVDEDTWKELY 264


>11_02_0056 +
           7828453-7828717,7829425-7829427,7829658-7829912,
           7829997-7830124,7831063-7831207,7832178-7832275,
           7833253-7833395,7835119-7835239,7835492-7835584,
           7835712-7835828
          Length = 455

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = -3

Query: 574 GSGCGEVFSTLAKAASLILGSG*GPMLATVQTLLTPALNA*LEKSRLSNGLEDTTLGAFF 395
           G G GE FST   A  +   S     L++  + + P  +A L  S L  G ED  +    
Sbjct: 38  GDGDGEAFSTTTTAVRISASSPLRRALSSAASGILPGGSAHLLPSPLPLGEEDLNV---- 93

Query: 394 FSSTLAFLYLSTLSAYSNRTAYDNSQLS-CSFSVP 293
           +S    F +L+  ++ SN +A   +Q S  S SVP
Sbjct: 94  YSLRAGFSFLNFFTSASNWSAGFPTQNSFASASVP 128


>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +3

Query: 6   LVNFVKFTTICYLKTYSFLT 65
           L NFVK T  C +KTY FLT
Sbjct: 219 LGNFVKATFDCLMKTYGFLT 238


>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +3

Query: 6   LVNFVKFTTICYLKTYSFLT 65
           L NFVK T  C +KTY FLT
Sbjct: 216 LGNFVKATFDCLMKTYGFLT 235


>05_05_0005 +
           21442819-21442916,21443053-21443119,21443226-21443291,
           21443368-21443414,21443480-21443543,21443627-21443707,
           21443781-21443823,21443912-21443961,21444262-21444343,
           21445045-21445120,21445451-21445558,21445782-21445833,
           21445911-21446570,21446652-21448067
          Length = 969

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 570 EPLQTEVNLVNQPSDVLKLLFVQDLRNLXTKINEALVA-VPNCY 698
           +P +    + ++ SD++   ++QD+  L +KIN + +  +P CY
Sbjct: 214 QPTEYRPAIAHRFSDLMNQQYLQDMAGLISKINRSSIGPLPACY 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,904,287
Number of Sequences: 37544
Number of extensions: 293712
Number of successful extensions: 738
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)