Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9k18
(708 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47075-2|CAA87380.1| 253|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z68296-2|CAA92592.1| 297|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 29 4.3
U41012-4|AAA82296.2| 413|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z92786-10|CAB07212.3| 984|Caenorhabditis elegans Hypothetical p... 27 9.9
AL021473-3|CAA16306.3| 984|Caenorhabditis elegans Hypothetical ... 27 9.9
>Z47075-2|CAA87380.1| 253|Caenorhabditis elegans Hypothetical
protein E02H1.5 protein.
Length = 253
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 417 SSNPLDNLDFSSQAFKAGVNRVCTVASIGP-HPDPKIRLAA 536
S NPL+ LD+SS F +C++ I HPDPK+ + A
Sbjct: 119 SQNPLNRLDYSSPNFAENARALCSILGISAHHPDPKVLMKA 159
>Z68296-2|CAA92592.1| 297|Caenorhabditis elegans Hypothetical
protein C46C2.3 protein.
Length = 297
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +3
Query: 513 DPKIRLAALAKVLKTSPHPEPLQTEVNLVNQPS---DVLKL-LFVQDLRNLXTKINE 671
D RL K L PHP L V L N PS + LK LF+ ++R T I E
Sbjct: 121 DVAARLEEYGKALAYFPHPMLLVDAVKLENDPSVKLETLKRDLFMPEMRGKFTLIKE 177
>Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical
protein C09H6.1b protein.
Length = 1309
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +3
Query: 6 LVNFVKF-TTICYLKTYSFLTMSNLFKLKLSALGHPNPEFFNCEDEKEY-RSVVLWLEDQ 179
+VN K T+ T + N + K+ L C +E +S+ LW + +
Sbjct: 628 IVNHEKLHPTVVVANTNEAPVVKNEIEAKVEVLSKTVSSPVECTEESSLSKSIQLWCQRE 687
Query: 180 KIRHYKIEDREGLRNID 230
K+RH +++++ + ID
Sbjct: 688 KLRHPELDEQFTRKMID 704
>Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical
protein C09H6.1a protein.
Length = 1311
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +3
Query: 6 LVNFVKF-TTICYLKTYSFLTMSNLFKLKLSALGHPNPEFFNCEDEKEY-RSVVLWLEDQ 179
+VN K T+ T + N + K+ L C +E +S+ LW + +
Sbjct: 628 IVNHEKLHPTVVVANTNEAPVVKNEIEAKVEVLSKTVSSPVECTEESSLSKSIQLWCQRE 687
Query: 180 KIRHYKIEDREGLRNID 230
K+RH +++++ + ID
Sbjct: 688 KLRHPELDEQFTRKMID 704
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 507 HPDPKIRLAALAKVLKTSPHPEPL 578
HPDP I + A+A V+ +P P P+
Sbjct: 786 HPDPVISMNAMASVIPGAPLPAPV 809
>U41012-4|AAA82296.2| 413|Caenorhabditis elegans Hypothetical
protein C06A6.5 protein.
Length = 413
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +3
Query: 39 YLKTYSFLTMSNLFKLKLS-ALGH-PNPEFFNCEDEKEYRSVVLWLEDQKIRHYKIEDRE 212
Y T S ++N K +LS A+ + + N E +K R+VV WL+ ++
Sbjct: 118 YRSTRSVEALTNFVKFQLSTAINEFSSQDQLNQEMDKSKRNVVAWLKKDGPEFANLKKVA 177
Query: 213 GLRNIDSDFW 242
+ D FW
Sbjct: 178 SILREDCSFW 187
>Z92786-10|CAB07212.3| 984|Caenorhabditis elegans Hypothetical
protein Y20C6A.1 protein.
Length = 984
Score = 27.5 bits (58), Expect = 9.9
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 12 NFVKFTTICYLKTYSFLTMSNLFKLKLSALGHPNPEFF--NCEDEKEYRSVVLWLE-DQK 182
+F K +T Y TYS LT+ LK L H PE+F N + R VV E K
Sbjct: 223 HFAKVSTGMYPNTYSELTL-----LKNHFLNHETPEYFELNYPESFNNRRVVKTSELFGK 277
Query: 183 IRHYKIE 203
+ H K++
Sbjct: 278 LFHVKLQ 284
>AL021473-3|CAA16306.3| 984|Caenorhabditis elegans Hypothetical
protein Y20C6A.1 protein.
Length = 984
Score = 27.5 bits (58), Expect = 9.9
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 12 NFVKFTTICYLKTYSFLTMSNLFKLKLSALGHPNPEFF--NCEDEKEYRSVVLWLE-DQK 182
+F K +T Y TYS LT+ LK L H PE+F N + R VV E K
Sbjct: 223 HFAKVSTGMYPNTYSELTL-----LKNHFLNHETPEYFELNYPESFNNRRVVKTSELFGK 277
Query: 183 IRHYKIE 203
+ H K++
Sbjct: 278 LFHVKLQ 284
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,265,953
Number of Sequences: 27780
Number of extensions: 273470
Number of successful extensions: 705
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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