Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9k14
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   3.2  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   3.2  
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    26   5.5  
SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c...    26   5.5  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    25   9.7  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    25   9.7  

>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
 Frame = +1

Query: 292 DCRRSGCQGSQLCQTLPRPLCEPAHVAC--TSHFKN 393
           DC  + C   + C+     LC+    AC    HFKN
Sbjct: 334 DCENNPCCDGKTCKLTKGSLCDDQQDACCYQCHFKN 369


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 272  VGTAFNTTAAEVAAKGRNCAKPYQ 343
            +GTAFN    EV   G   A PYQ
Sbjct: 1707 MGTAFNMPTNEVHGVGAEMASPYQ 1730


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 588 NKQRKPFNCLEQCLCISLREQCNVIFNY 505
           ++++K  +CL   LC + R  C ++ NY
Sbjct: 384 DREKKYVHCLNSTLCATERALCCILENY 411


>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 50

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 588 NKQRKPFNCLEQCLCISLREQC 523
           +KQ KP +C  +C C   +E C
Sbjct: 9   SKQGKPCDCQSKCGCQDCKESC 30


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 591 FNKQRKPFNC-LEQCLCISLREQCNVIFNYILYS*KNGSSFHFIAFNLAIFKLCL 430
           F+  R   NC L++  C  L+ +C +   +I    K   S+HFI+F+  +  L L
Sbjct: 47  FDTIRSKQNCRLKEIYC-RLKIRCRLKKKFIKSLSKKIISYHFISFHTIVVLLLL 100


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 153 NNLRGCYYFLEYE 191
           NN+RGC YF  Y+
Sbjct: 280 NNVRGCSYFYSYQ 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,423,166
Number of Sequences: 5004
Number of extensions: 46574
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)