Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9k10
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    30   0.29 
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    30   0.38 
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    28   1.6  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    27   2.1  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    27   3.6  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    26   6.3  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    25   8.3  

>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = +1

Query: 160 LPYTAVYSPATRQQDTVSATRRTQATNGALQKGVH**SRERLSWLYQKYGKVLYGSLPKG 339
           +P    YS A +     + T  +    G L K V   S E L +L+Q +G+++Y  +P G
Sbjct: 282 MPPVGFYS-AAQPVPQFADTANSTVFVGGLSKFV---SEEELKYLFQNFGEIVYVKIPPG 337

Query: 340 HQRTGISIRRRQPSKPSLRCKQ--PNGRRRL 426
                +    RQ ++ ++   Q  P G  R+
Sbjct: 338 KGCGFVQFVNRQSAEIAINQLQGYPLGNSRI 368


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
 Frame = +2

Query: 62  RMSGRQSWNEEDMAKAVAAVVSGKMGYKLASRT-YHIPRSTLQRRASKIRYQQPDEPKPL 238
           RM  R  W     +     +++ K  Y+L  R   H P     R  SK+     DEP P+
Sbjct: 511 RMYDRLEWINSFSSLKYVGLLAAKDLYQLELRPKLHYPNHVTFRDGSKM-----DEPTPV 565

Query: 239 MGHYRRVFTDSQEKDLVGYIKSMEKYF 319
            G+  R+ + +  K   G +   E YF
Sbjct: 566 EGYLIRLTSSTGRKTRYGRMFHKELYF 592


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 19/84 (22%), Positives = 36/84 (42%)
 Frame = +2

Query: 56   YERMSGRQSWNEEDMAKAVAAVVSGKMGYKLASRTYHIPRSTLQRRASKIRYQQPDEPKP 235
            YE   G+Q W+E D  K+V   +  +    L+ RT  +  +    R SK+          
Sbjct: 2199 YEEWCGKQDWDESD--KSVVCWIE-EHNDDLSKRTQELKSTYYSERLSKLLRSDRKGMID 2255

Query: 236  LMGHYRRVFTDSQEKDLVGYIKSM 307
             +        ++++K+L G + S+
Sbjct: 2256 SLAQVLTELDENEKKELAGKLASV 2279


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 276 RKT*LAISKVWKSTLWESPEGTSENWHFNTP 368
           +K  + ISKVW+S L E P  T  N  ++ P
Sbjct: 132 KKVKVDISKVWRSILAEKPRVTRFNIQWDNP 162


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
 Frame = +2

Query: 146 LASRTYHIPRSTLQRRASKIRYQQPDEPKPLMGHYRRV--FTDSQ-----EKDLVGYIKS 304
           + S+   +  +  Q  AS+  Y  P   K LMG  ++V  F   Q     EK L  ++ +
Sbjct: 12  IPSKGISLVAARFQSTASRASYVTPPYEK-LMGKLQQVRKFLPGQKLTLAEKVLYSHLVN 70

Query: 305 MEKYFMGVSRRDIR 346
            E+ F GVS  DIR
Sbjct: 71  PEESFSGVSPSDIR 84


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 461 LDRSDHENILEPVNFDQFYHFMCQL 535
           LD+SD   + E +N D  Y+F+ +L
Sbjct: 555 LDKSDRNELAEDLNSDDRYNFISRL 579


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +2

Query: 185 QRRASKIRYQQPDEPKPLMGHYRRVFTDSQEKDLVGYIKSMEKYFMGVSR 334
           +R   KI Y +   PK     Y+     S E DLV  +   E+ F  VS+
Sbjct: 510 RRNIQKIFYDESLSPKDAYAEYKGESAKSSESDLV--VSDDEEDFFKVSK 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,099,365
Number of Sequences: 5004
Number of extensions: 66834
Number of successful extensions: 181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)