Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9k10
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0288 + 16416409-16416603,16417584-16417635,16417842-164178... 31 0.70
01_03_0156 + 13279354-13279479,13279722-13279790,13280102-132802... 31 1.2
04_04_1272 - 32288142-32288456,32288538-32288670,32288780-322890... 29 3.7
12_01_0005 + 34977-35516,35620-35777,35889-37192,37532-37626,387... 29 4.9
11_01_0006 + 36564-37103,37207-37364,37476-38779,39119-39213,403... 29 4.9
09_06_0310 - 22212348-22212695,22213561-22213766,22213796-222139... 29 4.9
06_01_0182 + 1413551-1413794,1413883-1414139,1414241-1414387,141... 29 4.9
02_03_0170 + 15935942-15936007,15936107-15936239,15936335-159364... 28 6.5
11_06_0509 - 24411655-24411990 28 8.6
03_06_0568 - 34778408-34778710,34779340-34779411,34779549-347796... 28 8.6
>09_04_0288 +
16416409-16416603,16417584-16417635,16417842-16417890,
16418354-16418497,16418730-16418783,16418883-16418948,
16419174-16419252,16419390-16419467
Length = 238
Score = 31.5 bits (68), Expect = 0.70
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 322 GSLPKGHQRTGISIRRRQPSKPSLRCKQPNGR 417
GSL + + +S RRR P+ P +RC Q G+
Sbjct: 34 GSLGDASRVSSVSFRRRPPASPLVRCSQDPGK 65
>01_03_0156 +
13279354-13279479,13279722-13279790,13280102-13280272,
13280358-13280464,13281332-13281437,13281540-13281586,
13283429-13283747,13283917-13284006,13284095-13284157,
13284303-13284377,13285379-13285441,13286677-13286700,
13286926-13286978,13287687-13287861
Length = 495
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = +2
Query: 89 EEDMAKAVAAVVSGKMGYKLASRTYHIPRSTLQRRASKIRYQQPDEPKPLMGHYRRVFTD 268
E D K+V ++ G+ KLA +P +L+ S++ +QP P L RR
Sbjct: 234 ENDDMKSVLSLDDGRWS-KLAEECASVPSVSLEEELSQLSIKQPSPPPVLAELERRPIAP 292
Query: 269 SQEKD 283
S+ D
Sbjct: 293 SEVAD 297
>04_04_1272 -
32288142-32288456,32288538-32288670,32288780-32289020,
32289124-32289340,32289557-32289681,32290873-32292157
Length = 771
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 209 YQQPDEPKPLMGHYRRVFTDSQEKDLVGYIKSMEKYFMG 325
++ PD+P P G YRRV S D+V + +E+Y G
Sbjct: 183 WRSPDDPSP--GAYRRVLDTSGIPDVVLWQDGVERYRSG 219
>12_01_0005 +
34977-35516,35620-35777,35889-37192,37532-37626,
38738-38816,38938-38954
Length = 730
Score = 28.7 bits (61), Expect = 4.9
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = +2
Query: 86 NEEDMAKAVAAVVSGKMGYKLASRTYHIPRSTLQRRASKIRYQQPDEPKPLMGHYRRV-F 262
N + VA + + Y AS I + ++R K+R Q P P +G + V F
Sbjct: 635 NSNSLEGDVAKIHEQLLNYSYASGEVEISLTRSEKRTKKLRSQHPIY-VPFLGFLKSVSF 693
Query: 263 TDSQEKDLVGYIKSMEKYFMGVS 331
K L +I S Y G +
Sbjct: 694 KKKASKGLTNHILSRIDYGRGTA 716
>11_01_0006 +
36564-37103,37207-37364,37476-38779,39119-39213,
40324-40402,40524-40540
Length = 730
Score = 28.7 bits (61), Expect = 4.9
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = +2
Query: 86 NEEDMAKAVAAVVSGKMGYKLASRTYHIPRSTLQRRASKIRYQQPDEPKPLMGHYRRV-F 262
N + VA + + Y AS I + ++R K+R Q P P +G + V F
Sbjct: 635 NSNSLEGDVAKIHEQLLNYSYASGEVEISLTRSEKRTKKLRSQHPIY-VPFLGFLKSVSF 693
Query: 263 TDSQEKDLVGYIKSMEKYFMGVS 331
K L +I S Y G +
Sbjct: 694 KKKASKGLTNHILSRIDYGRGTA 716
>09_06_0310 -
22212348-22212695,22213561-22213766,22213796-22213905,
22214351-22214427,22214466-22214486,22214518-22215651
Length = 631
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 83 WNEEDMAKAVAAVVSG-KMGYKLASRTYHIPRSTLQRRASKIR 208
W E D+ +++ + G KM Y LA+ H + + ++ SK+R
Sbjct: 269 WKETDVEESLKVSLEGTKMAYDLATTALHKVGAWVDKKESKVR 311
>06_01_0182 +
1413551-1413794,1413883-1414139,1414241-1414387,
1414487-1414804
Length = 321
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 95 DMAKAVAAVVSGKMGYKLASRTYHIPRSTLQRRASKIRYQQP 220
D A A + K G KL S+ +H P + Q++ + +QQP
Sbjct: 228 DAVMAKNAAIVRKSGEKLTSKQHHHPPARQQQQQAHQHHQQP 269
>02_03_0170 +
15935942-15936007,15936107-15936239,15936335-15936406,
15936746-15936790,15937265-15937366,15937461-15937629,
15937754-15937852,15938288-15938437,15940130-15940169,
15940632-15940689,15942454-15942542,15943297-15943395,
15943486-15943601,15943685-15943803,15944350-15944363
Length = 456
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Frame = +2
Query: 374 NHLNHPFDVNSRMAGEDWVRNF------LKRNPELLDRSDHENILEPVNFDQFYHFMCQL 535
+H+NH F V++ GED + F L R ++ D + L V+ DQ H L
Sbjct: 191 SHINHNFSVHAVHMGEDVMSVFQHAIKVLSRREDITDSREGAEALWQVDSDQMEHLFSTL 250
>11_06_0509 - 24411655-24411990
Length = 111
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 349 TGISIRRRQPSKPSLRCKQPNGRRRLGAKLPEAQSRTLG 465
T +++R R+ + C +P G+RR A+ PEA + G
Sbjct: 31 TPLTMRARRSAWKEGSCGEPKGKRRQRAREPEAAAARRG 69
>03_06_0568 -
34778408-34778710,34779340-34779411,34779549-34779635,
34779722-34779880,34780641-34780739,34780823-34780903,
34781007-34781461,34781550-34781679,34781952-34782743
Length = 725
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 592 FFYAHSRFLLLCTCLFNL 645
FF H RF LL TCL+++
Sbjct: 311 FFLKHERFALLVTCLYSM 328
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,365,095
Number of Sequences: 37544
Number of extensions: 416519
Number of successful extensions: 1081
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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