Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9k10
(722 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68010-2|CAA92010.2| 433|Caenorhabditis elegans Hypothetical pr... 40 0.001
AB236333-1|BAE45265.1| 433|Caenorhabditis elegans MBlk-1 Relate... 40 0.001
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 29 3.4
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 29 3.4
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 29 3.4
AF077529-5|AAN60534.1| 756|Caenorhabditis elegans Hypothetical ... 29 4.4
AF077529-4|AAC26255.2| 783|Caenorhabditis elegans Hypothetical ... 29 4.4
Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical pr... 28 5.9
U40061-5|AAY43979.1| 312|Caenorhabditis elegans Hypothetical pr... 28 5.9
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical... 28 7.8
>Z68010-2|CAA92010.2| 433|Caenorhabditis elegans Hypothetical
protein T01C1.2 protein.
Length = 433
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/72 (30%), Positives = 38/72 (52%)
Frame = +2
Query: 74 RQSWNEEDMAKAVAAVVSGKMGYKLASRTYHIPRSTLQRRASKIRYQQPDEPKPLMGHYR 253
R+++ ED+ +AV + GK+G + AS Y IPRSTL+ + K+ + K G
Sbjct: 151 RRNYTVEDLTQAVEDIRQGKLGTRRASVVYGIPRSTLRNKIYKLEAEGAIPSKVRRGKIA 210
Query: 254 RVFTDSQEKDLV 289
++++K V
Sbjct: 211 ARRAEAEQKRCV 222
>AB236333-1|BAE45265.1| 433|Caenorhabditis elegans MBlk-1 Related
factor-1 protein.
Length = 433
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/72 (30%), Positives = 38/72 (52%)
Frame = +2
Query: 74 RQSWNEEDMAKAVAAVVSGKMGYKLASRTYHIPRSTLQRRASKIRYQQPDEPKPLMGHYR 253
R+++ ED+ +AV + GK+G + AS Y IPRSTL+ + K+ + K G
Sbjct: 151 RRNYTVEDLTQAVEDIRQGKLGTRRASVVYGIPRSTLRNKIYKLEAEGAIPSKVRRGKIA 210
Query: 254 RVFTDSQEKDLV 289
++++K V
Sbjct: 211 ARRAEAEQKRCV 222
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Frame = +2
Query: 173 RSTLQRRASKIRYQQPDEPKPLMGHYRRVFTDSQEKDLVGYIKSMEKYFMGVSRRDIREL 352
+ T R + IR + L Y RV TD+++ ++G ++ +K ++ + ++E+
Sbjct: 709 KETQIRYSDDIRRNIQKDLDDLREKYDRVHTDNEK--ILGELEHAQKA-AHLAEQQLKEI 765
Query: 353 A-----FQYAEDNHLNHPFDVNSRMAGEDWVRNFLKRN 451
+Q +D H H FD+ ++ E R L++N
Sbjct: 766 KIQRDDYQKQKDEHARHLFDIRHKLETEIKGRQDLEKN 803
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Frame = +2
Query: 173 RSTLQRRASKIRYQQPDEPKPLMGHYRRVFTDSQEKDLVGYIKSMEKYFMGVSRRDIREL 352
+ T R + IR + L Y RV TD+++ ++G ++ +K ++ + ++E+
Sbjct: 782 KETQIRYSDDIRRNIQKDLDDLREKYDRVHTDNEK--ILGELEHAQKA-AHLAEQQLKEI 838
Query: 353 A-----FQYAEDNHLNHPFDVNSRMAGEDWVRNFLKRN 451
+Q +D H H FD+ ++ E R L++N
Sbjct: 839 KIQRDDYQKQKDEHARHLFDIRHKLETEIKGRQDLEKN 876
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Frame = +2
Query: 173 RSTLQRRASKIRYQQPDEPKPLMGHYRRVFTDSQEKDLVGYIKSMEKYFMGVSRRDIREL 352
+ T R + IR + L Y RV TD+++ ++G ++ +K ++ + ++E+
Sbjct: 782 KETQIRYSDDIRRNIQKDLDDLREKYDRVHTDNEK--ILGELEHAQKA-AHLAEQQLKEI 838
Query: 353 A-----FQYAEDNHLNHPFDVNSRMAGEDWVRNFLKRN 451
+Q +D H H FD+ ++ E R L++N
Sbjct: 839 KIQRDDYQKQKDEHARHLFDIRHKLETEIKGRQDLEKN 876
>AF077529-5|AAN60534.1| 756|Caenorhabditis elegans Hypothetical
protein C09E8.1b protein.
Length = 756
Score = 28.7 bits (61), Expect = 4.4
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +3
Query: 99 WQRLSPLSSQVRWATSWHPGPTIY 170
+++L+P+S+ + WA +WH +Y
Sbjct: 61 FRKLAPISAGIGWALTWHVAEKLY 84
>AF077529-4|AAC26255.2| 783|Caenorhabditis elegans Hypothetical
protein C09E8.1a protein.
Length = 783
Score = 28.7 bits (61), Expect = 4.4
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +3
Query: 99 WQRLSPLSSQVRWATSWHPGPTIY 170
+++L+P+S+ + WA +WH +Y
Sbjct: 61 FRKLAPISAGIGWALTWHVAEKLY 84
>Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical
protein F09C3.1 protein.
Length = 1391
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 377 HLNHPFDVNSRMAGEDWVRNFLKRNPELLDRSDHENILEPVNFDQFY 517
++N +S + E NFL+ NPEL D +EN VNFD+++
Sbjct: 563 YVNTSTSKHSTTSQEPLHPNFLRWNPELQDFVAYEN----VNFDEYW 605
>U40061-5|AAY43979.1| 312|Caenorhabditis elegans Hypothetical
protein ZK563.7 protein.
Length = 312
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 311 KYFMGVSRRDIRELAFQYAEDNHLN-HPFDVNSRMAGEDWVRNFLK 445
K ++G S ++R +Y D+ + N M EDW+ F+K
Sbjct: 118 KLYLGSSGHELRTFTGEYLNDDEMYIRVISGNGGMRVEDWISRFVK 163
>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
protein Y47G6A.29 protein.
Length = 2460
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 29 KQMISMVRKYERMSGRQSWNEEDMAKAVAAVVSG 130
++++ M R YE+ R N+ED+ + V +V+G
Sbjct: 2054 EKVLDMTRDYEKHMQRMRTNKEDVVEKVKVMVNG 2087
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,696,456
Number of Sequences: 27780
Number of extensions: 359705
Number of successful extensions: 814
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -