Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9k10
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             42   4e-06
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          41   1e-05
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   5.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 42.3 bits (95), Expect = 4e-06
 Identities = 18/49 (36%), Positives = 33/49 (67%)
 Frame = +2

Query: 71  GRQSWNEEDMAKAVAAVVSGKMGYKLASRTYHIPRSTLQRRASKIRYQQ 217
           GR+++ EE++  A+  + SGK+G + A+  Y IPRSTL+ +  K+  ++
Sbjct: 587 GRRAYTEEELQAALRDIQSGKLGTRRAAVIYGIPRSTLRNKVYKLAMER 635



 Score = 30.7 bits (66), Expect = 0.015
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +2

Query: 77   QSWNEEDMAKAVAAVVSGKMGYKLASRTYHIPRSTLQRRASKIRYQQP 220
            ++++ + + +AV AV  G+M    A   Y +P STL+ +  +    +P
Sbjct: 1041 RNYDRDSLVEAVRAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRP 1088


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 41.1 bits (92), Expect = 1e-05
 Identities = 20/55 (36%), Positives = 31/55 (56%)
 Frame = +2

Query: 71  GRQSWNEEDMAKAVAAVVSGKMGYKLASRTYHIPRSTLQRRASKIRYQQPDEPKP 235
           G +SW +EDM  A+ A+ +  M    AS T+ IP +TL +RA ++    P +  P
Sbjct: 407 GSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGP 461



 Score = 33.1 bits (72), Expect = 0.003
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +2

Query: 77  QSWNEEDMAKAVAAVVSGKMGYKLASRTYHIPRSTLQR--RASKIRYQQPDEPKP 235
           +SW++E +  A+ A+ +G +    AS+ + IP STL +  R   IR   P    P
Sbjct: 463 KSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASP 517


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 659 CIKESKLNRHVQSSKNL 609
           C+ +S LN H++S  N+
Sbjct: 26  CVNKSMLNSHLKSHSNV 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,758
Number of Sequences: 438
Number of extensions: 4720
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)