Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9k05
(737 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 25 0.56
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.98
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.98
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.98
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.98
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.98
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.98
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.98
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.98
DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 24 1.3
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 24 1.3
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 23 4.0
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 21 9.1
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 21 9.1
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 21 9.1
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 21 9.1
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 21 9.1
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 21 9.1
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 21 9.1
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 25.4 bits (53), Expect = 0.56
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 581 FTVRPDSGEPLGRGTKIVL 637
FT+ PDSGE L G I+L
Sbjct: 253 FTLPPDSGEKLSLGVTILL 271
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.98
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 581 FTVRPDSGEPLGRGTKIVL 637
FT+ PDSGE L G I+L
Sbjct: 216 FTLPPDSGEKLTLGVTILL 234
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.98
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 581 FTVRPDSGEPLGRGTKIVL 637
FT+ PDSGE L G I+L
Sbjct: 216 FTLPPDSGEKLTLGVTILL 234
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.98
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 581 FTVRPDSGEPLGRGTKIVL 637
FT+ PDSGE L G I+L
Sbjct: 216 FTLPPDSGEKLTLGVTILL 234
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.98
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 581 FTVRPDSGEPLGRGTKIVL 637
FT+ PDSGE L G I+L
Sbjct: 216 FTLPPDSGEKLTLGVTILL 234
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.98
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 581 FTVRPDSGEPLGRGTKIVL 637
FT+ PDSGE L G I+L
Sbjct: 216 FTLPPDSGEKLTLGVTILL 234
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.98
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 581 FTVRPDSGEPLGRGTKIVL 637
FT+ PDSGE L G I+L
Sbjct: 216 FTLPPDSGEKLTLGVTILL 234
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.6 bits (51), Expect = 0.98
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 581 FTVRPDSGEPLGRGTKIVL 637
FT+ PDSGE L G I+L
Sbjct: 284 FTLPPDSGEKLTLGVTILL 302
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.6 bits (51), Expect = 0.98
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 581 FTVRPDSGEPLGRGTKIVL 637
FT+ PDSGE L G I+L
Sbjct: 284 FTLPPDSGEKLTLGVTILL 302
>DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 24.2 bits (50), Expect = 1.3
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 571 RRLVHSPPRQR*APWSRYKDRPSRQRGLGRIHGRTQNQRDRKRNIPSSSATQS 729
+R S R++ + + K R R+R R RT+ +R R+ I SS + ++
Sbjct: 37 KRYSRSREREQKSYKNERKYRKYRERSKERSRDRTERERSREPKIISSLSNKT 89
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 24.2 bits (50), Expect = 1.3
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 571 RRLVHSPPRQR*APWSRYKDRPSRQRGLGRIHGRTQNQRDRKRNIPSSSATQS 729
+R S R++ + + K R R+R R RT+ +R R+ I SS + ++
Sbjct: 37 KRYSRSREREQKSYKNERKYRKYRERSKERSRDRTERERSREPKIISSLSNKT 89
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 22.6 bits (46), Expect = 4.0
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +1
Query: 571 RRLVHSPPRQR*APWSRYKDRPSRQRGLGRIHGRTQNQRDRKRNIPSSSATQS 729
+R S R++ + + + R R+R R RT+ +R R+ I SS + ++
Sbjct: 270 KRYSRSREREQNSYKNEREYRKYRERSKERSRDRTERERSREPKIISSLSNKT 322
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 9.1
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +1
Query: 616 SRYKDRPSRQRGLGRIHGRTQNQRDRKR 699
SRY+D R R G RDR R
Sbjct: 232 SRYEDSRHEDRNSYRNDGERSCSRDRSR 259
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 9.1
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +1
Query: 616 SRYKDRPSRQRGLGRIHGRTQNQRDRKR 699
SRY+D R R G RDR R
Sbjct: 232 SRYEDSRHEDRNSYRNDGERSCSRDRSR 259
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 9.1
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +1
Query: 616 SRYKDRPSRQRGLGRIHGRTQNQRDRKR 699
SRY+D R R G RDR R
Sbjct: 232 SRYEDSRHEDRNSYRNDGERSCSRDRSR 259
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 9.1
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +1
Query: 616 SRYKDRPSRQRGLGRIHGRTQNQRDRKR 699
SRY+D R R G RDR R
Sbjct: 232 SRYEDSRHEDRNSYRNDGERSCSRDRSR 259
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 21.4 bits (43), Expect = 9.1
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +1
Query: 616 SRYKDRPSRQRGLGRIHGRTQNQRDRKR 699
SRY+D R R G RDR R
Sbjct: 232 SRYEDSRHEDRNSYRNDGERSCSRDRSR 259
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 21.4 bits (43), Expect = 9.1
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 658 RIHGRTQNQRDRKRNIPSSSATQSS 732
++HGR ++ + K N ++A QSS
Sbjct: 364 KMHGRGRSGKKSKFNAAVAAAVQSS 388
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 21.4 bits (43), Expect = 9.1
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +1
Query: 616 SRYKDRPSRQRGLGRIHGRTQNQRDRKR 699
SRY+D R R G RDR R
Sbjct: 232 SRYEDSRHEDRNSYRNDGERSCSRDRSR 259
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,216
Number of Sequences: 438
Number of extensions: 4827
Number of successful extensions: 30
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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