Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9k04
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|...    27   2.0  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    27   2.7  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    26   4.7  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    26   6.2  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    23   6.2  

>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 271

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +3

Query: 570 NKIKSLEKYNRIMRN*FICQYKNET 644
           NK+K+++ Y R++R  F+ Q +N +
Sbjct: 5   NKVKNVKSYTRLVRQGFLSQQRNHS 29


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 92   KKQKFVGTVAKKTSSVLNSNLNKALDERRKLQIKLREATNKQHQDMS 232
            KKQKF+ +V  K S +L   +++  DE  +    + E  N++  +M+
Sbjct: 998  KKQKFLNSVIIKASVILEKEISEKQDEASQ-TTNVAELVNQKISEMN 1043


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
 Frame = -1

Query: 453 IWTDIF----NRYFIWTRAWFPGP 394
           IW DI      RYF W +A FP P
Sbjct: 408 IWLDIEYASKRRYFTWDKATFPNP 431


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1101

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 65   LQVVYIKRMKKQKFVGTVAKKTSSV--LNSNLNKALDERRKLQIKLREATNKQHQDM 229
            +++VY       +  GTV +  + V   NSN +K LDE +   I ++E   +  +++
Sbjct: 952  VELVYYLAYHSDRIFGTVEELPTPVSPANSNNDKQLDESKFQAIAMKEMPERHPKEI 1008


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 22.6 bits (46), Expect(2) = 6.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 644 RFVFVLTNKLVSHDSIILFQAFYFVFAGDIHIFD 543
           +  FV   KL+ +D++IL + F+F     + + D
Sbjct: 381 QLAFVERCKLIVNDALILAKKFHFDVFNAVTVLD 414



 Score = 21.4 bits (43), Expect(2) = 6.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 458 ILFGQIFLTDILFGQGLG 405
           +L   +FL D+ FG+G G
Sbjct: 412 VLDNNLFLKDLKFGEGDG 429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,980,801
Number of Sequences: 5004
Number of extensions: 64076
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)