Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9k03
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    27   2.8  
SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.6  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    26   6.4  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    26   6.4  
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.4  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    25   8.4  

>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -2

Query: 728 AQSS*GIANT*LMSTSNLGSLSRRYAITFF 639
           A S+ GI    L   SN G LSR++A TFF
Sbjct: 88  ASSNGGIVIQVLGEMSNKGKLSRKFAQTFF 117


>SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 159

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
 Frame = +1

Query: 331 TQDDHVPAIDGTIEWTPGVTMNFTYRFADDPIGETLFGNITWKIDLNQPAHWTHAESTYD 510
           T +  VP+  G     P   +  +    +DP  +TL G +  +  +++     H     D
Sbjct: 12  TANKPVPSYSGDSSQLPSKWLRSSKNMLEDPSFKTLAGKVKDEYFVSESDEKFH-PICID 70

Query: 511 GIYNTY-VIDTE----YKTWALLLHCAEQTEGARYLTAFVLSR-TTKLQKNVMAYLRD 666
            I + +  ID +    ++ +  ++H  EQ+ G++ +  F     +TK    V+A+L D
Sbjct: 71  NIPDEFEEIDAKTFDPHQKYKKVIHAIEQSSGSKDIHYFSYEESSTKTVYYVLAHLND 128


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 454 WKIDLNQPAHWTHAESTYDGIYNTYVIDTEYKTWALL 564
           W++D +QP H T   S++  I +  +ID   K+  L+
Sbjct: 221 WRVDTDQPLHRTIDPSSFIKINSKEIIDFLEKSKTLV 257


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +2

Query: 575 RSRRKALVTSPHSFSPGQ--RNCRRT*WRTCETSCQDSKWTSTMCSRSLTTTAP 730
           R   K L  +P+S  P     +  +   +T   SC D KW S+  S  + T +P
Sbjct: 59  RELLKVLAVNPNSSKPPVCISDLLQKSTQTKHISCNDVKWGSSFASNLIFTCSP 112


>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 457 KIDLNQPAH-WTHAESTYDGIYNTYVIDTEY 546
           K  LN P H W  A   +D      +IDT+Y
Sbjct: 74  KFRLNGPIHHWDIANELFDTALGVEIIDTQY 104


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 358 LWRVRDRPE*TRLSYNCMRALLQHSRSTQPH-TSLPVS 248
           LW++R R   ++   NC+R++  H+ S   + TS  +S
Sbjct: 670 LWKLRVRGALSKFPTNCLRSVYSHTVSLMKYLTSAVIS 707


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,041,792
Number of Sequences: 5004
Number of extensions: 63447
Number of successful extensions: 213
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)