Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9k03
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0020 + 22182649-22182829,22183900-22183999,22184415-221844...    31   1.2  
04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680     29   2.9  
04_03_0643 + 18328807-18331969,18332560-18332627                       29   2.9  
03_04_0088 + 17209568-17209876,17209966-17210595,17210846-172110...    29   3.8  
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    29   5.0  
08_01_0239 - 1993833-1994114,1994266-1994436,1994541-1994686,199...    28   6.6  

>04_04_0020 +
           22182649-22182829,22183900-22183999,22184415-22184491,
           22184718-22184809,22188655-22189767
          Length = 520

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
 Frame = +3

Query: 297 SALIQLYESR-VYSGRSRTRH-RWYNRVDARSDHELYVPVRGRP----HRRDTLRKHYLE 458
           +ALI  +  R V  GR   RH +W    DA S  E Y           +R DTL+K Y  
Sbjct: 177 AALIDAWGERFVALGRGSLRHPQWQEVADAVSSREGYAKAPKSDVQCKNRIDTLKKKYKI 236

Query: 459 DRSEPA 476
           +R++PA
Sbjct: 237 ERAKPA 242


>04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680
          Length = 936

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 555 PSFIFCVYHVRIVNAVICAFSVCP 484
           PS + C+YHV+ +NA  C F   P
Sbjct: 668 PSSVSCLYHVQTINAKGCVFKRYP 691


>04_03_0643 + 18328807-18331969,18332560-18332627
          Length = 1076

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 555 PSFIFCVYHVRIVNAVICAFSVCP 484
           PS + C+YHV+ +NA  C F   P
Sbjct: 668 PSSVSCLYHVQTINAKGCVFKRYP 691


>03_04_0088 +
           17209568-17209876,17209966-17210595,17210846-17211019,
           17211434-17211515,17212091-17212278,17212993-17213152,
           17213441-17213763,17213860-17213967,17214116-17214189,
           17214249-17214361,17214461-17214741
          Length = 813

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +1

Query: 448 ITWKIDLNQPAHWTHAESTYDGIYNTYVIDTEYKTWALLLHCAEQT 585
           +TW  DL  P+ W   E         + IDT +  W L+    E+T
Sbjct: 673 LTWACDLVDPSRWHGEEPRPVRAATQWAIDTAFDLWQLIHPEKERT 718


>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 728 AQSS*GIANT*LMSTSNLGSLSRRYAITFFCS 633
           A S  GIAN   ++T N+G L   Y++TF CS
Sbjct: 329 ALSQVGIAN---VTTKNIGKLESSYSLTFKCS 357


>08_01_0239 -
           1993833-1994114,1994266-1994436,1994541-1994686,
           1995127-1995182,1995314-1995437,1995527-1995712,
           1995787-1995845,1996413-1996630,1996853-1996966,
           1997339-1997466,1997591-1997650,1998225-1998386,
           1998796-1998883
          Length = 597

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = -1

Query: 681 ESWQLVSQVRHHVLLQFRCPGENECGEVTSAFRLLRAVQQ 562
           ++W+ ++Q  + +LL   C   +  G+++SAF+ L+ +QQ
Sbjct: 41  DTWKTLNQGVYLILLYESCGTSDSHGKLSSAFQRLKYLQQ 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,924,363
Number of Sequences: 37544
Number of extensions: 422237
Number of successful extensions: 1233
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)