Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9j24
(607 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 260 8e-71
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 151 1e-37
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 146 2e-36
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 146 3e-36
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 36 0.006
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 30 0.30
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 2.8
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 26 4.9
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 26 4.9
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 26 4.9
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 6.5
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 25 6.5
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 25 8.6
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 25 8.6
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 260 bits (638), Expect = 8e-71
Identities = 112/146 (76%), Positives = 127/146 (86%)
Frame = +1
Query: 151 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 330
MREIVHIQ GQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 331 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 510
PRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120
Query: 511 RKEXEGCDCLQGFQLTHSLGGGTGAG 588
R+E E CD LQGFQLTHSLGGGTG+G
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSG 146
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 151 bits (365), Expect = 1e-37
Identities = 70/148 (47%), Positives = 94/148 (63%), Gaps = 2/148 (1%)
Frame = +1
Query: 151 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLER--INVYYNEATGGK 324
MREI+ I GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 325 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 504
YVPR+I VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 505 VVRKEXEGCDCLQGFQLTHSLGGGTGAG 588
+R+ + C LQGF + HS GGGTG+G
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSG 148
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 146 bits (354), Expect = 2e-36
Identities = 61/147 (41%), Positives = 101/147 (68%), Gaps = 2/147 (1%)
Frame = +1
Query: 154 REIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 333
REI+ +Q GQCGNQIG++FW+ + EHGI P GT + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 334 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDV 507
RAIL+DLEP ++++ S +G ++ P+N + ++ GAGNNWA G Y+ + + ++D+
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121
Query: 508 VRKEXEGCDCLQGFQLTHSLGGGTGAG 588
+ +E +G D L+GF L HS+ GGTG+G
Sbjct: 122 IDREADGSDSLEGFSLLHSIAGGTGSG 148
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 146 bits (353), Expect = 3e-36
Identities = 67/152 (44%), Positives = 95/152 (62%), Gaps = 6/152 (3%)
Frame = +1
Query: 151 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTG------TYHGDSDLQLERINVYYNEA 312
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 313 TGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 492
GK+VPR+I VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++D
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 493 SVLDVVRKEXEGCDCLQGFQLTHSLGGGTGAG 588
SVL+ +R+ + C LQGF + HS GGGTG+G
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSG 152
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 35.5 bits (78), Expect = 0.006
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 167 ISKEVNAETRL-GLSSGKLYPMSMASIRPERITETPTSSWSASTCTITRRLEES 325
+ + E RL L GKL P+ A ++ ++ TS++S +T +T+ EES
Sbjct: 388 LENRIRVENRLRSLEGGKLLPLPTAPVQQSKVQINGTSAYSTATDAVTKDAEES 441
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 29.9 bits (64), Expect = 0.30
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -2
Query: 306 VIVHVDALQLEVGVSVIRSGRID--AMLIGYNFPELSPNLVSALTSL 172
+ V D +L +S S +ID A IG FP +SPNL S++ L
Sbjct: 66 IFVPFDKCKLASSISSSPSPKIDGTAASIGMGFPPMSPNLQSSIPRL 112
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 385 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 486
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 4.9
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = -1
Query: 595 SKTQLQFLRQVSESTGILADSRNLQXLF*LHRAQNLPALRLRCSDP*PSCCQHPIAQRQS 416
S+ LQF + S+ + I ++R L L QNL L + P S C+ P R+
Sbjct: 65 SRVSLQFDSKGSQQSMIFTNNRCLSDKENLENLQNLLYLHCDLNRPHLS-CELPSEHREK 123
Query: 415 CPDGRSDRM 389
C R+ +
Sbjct: 124 CLKRRNSSL 132
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 190 NQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERI 291
N++G EV++++ +DPT + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Frame = -2
Query: 258 IRSGRIDAMLIGYNFPE----LSPNLVSALTSLDMN 163
++ G + + ++FP+ L P+L+S L+++DMN
Sbjct: 102 VQLGEVIGYIANFDFPDRWDTLLPDLISKLSAVDMN 137
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +1
Query: 541 QGFQLTHSLGGGTGAG-SWNVT 603
+GF + ++ GG GAG +WN T
Sbjct: 1110 EGFAMYETIAGGAGAGPTWNGT 1131
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 508 LHRAQNLPALRLRCSDP*PSCCQHPIAQRQSC 413
L +A LP R +C D PSCC + +SC
Sbjct: 474 LTQAHLLP--RTQCVDTPPSCCGGHCCKEESC 503
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 454 AKGHYTEGAELVDSVLDVVRKEXEGCDCLQ 543
A+GH G ELV + D +RK+ E L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 428 PKTKLSGRKI*PNGPERTESIVPGSRS 348
PK L R I PNGPE + + GS S
Sbjct: 25 PKEVLHTRVIVPNGPEEIKLRLVGSHS 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,397,183
Number of Sequences: 5004
Number of extensions: 47894
Number of successful extensions: 130
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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