Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9j23
(578 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 210 1e-55
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 130 1e-31
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 130 2e-31
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 117 1e-27
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 104 8e-24
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 91 8e-20
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 87 2e-18
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 31 0.16
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 27 2.0
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 26 4.6
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 25 8.0
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 25 8.0
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 210 bits (513), Expect = 1e-55
Identities = 97/168 (57%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Frame = +3
Query: 78 YDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRKI 257
YDRA++VFSPDG LLQVEY QEAVR+G+TA E+K+V KLQ +KI
Sbjct: 4 YDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKLQNVSNFQKI 63
Query: 258 CLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSN 437
++D+HV +AFAGL ADARILI++A++E Q+HKL + DPV++EY+TRY+AG++QKYTQS
Sbjct: 64 AMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSG 123
Query: 438 GRRPFGISCLIGGFDY-DGSPHLFQTEPSGIYYEWKANATGRSAKTVR 578
G RPFG+S LI GFD D +P ++QTEP+GIY WKA A GR++K R
Sbjct: 124 GVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAR 171
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 130 bits (315), Expect = 1e-31
Identities = 70/172 (40%), Positives = 98/172 (56%), Gaps = 1/172 (0%)
Frame = +3
Query: 66 MSARYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKL-QEER 242
MS YD T+FSP+G L QVEYA EA+ A EKK +KL ++E
Sbjct: 1 MSRSYDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEE 60
Query: 243 TVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQK 422
+ K+ + D+++ A AGLTADA ILIN A+ Q + T + + E + R + LKQ
Sbjct: 61 SAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQG 120
Query: 423 YTQSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVR 578
YTQ G RPFG+S L G+D+ LFQ+ PSG Y W+AN+ G ++ +V+
Sbjct: 121 YTQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQ 172
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 130 bits (313), Expect = 2e-31
Identities = 67/180 (37%), Positives = 102/180 (56%), Gaps = 6/180 (3%)
Frame = +3
Query: 57 FLTMSARYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQE 236
F+T S YDR + FSP+G L QVEYA EA++ GSTA EK+ + L E
Sbjct: 2 FMTRS-EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLME 60
Query: 237 ERTVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLK 416
+V K+ +D H+ A +GLTADAR +I A+++ Q+H+ T ++P +E T+ I L
Sbjct: 61 SHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLA 120
Query: 417 QKYTQSNG------RRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVR 578
++ + RPFG++ LI G D G P L+ +EPSG Y+ ++A A G ++ +
Sbjct: 121 LRFGEGEDGEERIMSRPFGVALLIAGIDEHG-PQLYHSEPSGTYFRYEAKAIGSGSEPAK 179
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 117 bits (281), Expect = 1e-27
Identities = 61/173 (35%), Positives = 100/173 (57%), Gaps = 2/173 (1%)
Frame = +3
Query: 66 MSARYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERT 245
M+ +Y ++T FSP+G L+Q+EYA AV G T+ EKK ++L +
Sbjct: 1 MTDKYAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGAS 60
Query: 246 VRKICLLDDHVVMAFAGLTADARILINRAQIECQS--HKLTVEDPVTLEYITRYIAGLKQ 419
+ K+C + + M ++G+ D R+L+++++ Q+ K+ E P T + + + IA + Q
Sbjct: 61 LEKVCAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPT-KILVQEIASVMQ 119
Query: 420 KYTQSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVR 578
+ TQS G RPFG+S L+ G D G P L+Q +PSG Y+ WKA A G+S+ +
Sbjct: 120 ESTQSGGVRPFGVSLLVAGMDEKG-PSLYQVDPSGTYFAWKATAIGKSSTAAK 171
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 104 bits (250), Expect = 8e-24
Identities = 57/168 (33%), Positives = 89/168 (52%)
Frame = +3
Query: 75 RYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRK 254
+YD T +SP G L QVEYA EA+++GS K++ +L + +K
Sbjct: 5 QYDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEELSSYQ--KK 62
Query: 255 ICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQS 434
+ +DDH+ +A AGL DAR+L N + E S K P+ + + +A Q TQ
Sbjct: 63 LIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQE 122
Query: 435 NGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVR 578
GRRP+G+ L+ G+D G PHL + +PSG+ E+ + G +++ R
Sbjct: 123 YGRRPYGVGFLVIGYDESG-PHLLEFQPSGLVLEYLGTSMGSRSQSAR 169
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 91.5 bits (217), Expect = 8e-20
Identities = 51/167 (30%), Positives = 79/167 (47%)
Frame = +3
Query: 78 YDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRKI 257
YD + FSPDG L Q EYA +AV ST EK +KL + R +I
Sbjct: 8 YDLGL-FFSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLKPRVNNRI 66
Query: 258 CLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSN 437
+D H+ +A G D + ++ RA+ E S + P+ I + Q +T +
Sbjct: 67 GSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYS 126
Query: 438 GRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVR 578
RPFG+ + +D +G PHL+ EP+G+Y+ + A G+ + R
Sbjct: 127 SVRPFGVMSFVATYDSEG-PHLYMVEPNGVYWGYNGAAAGKGRQVAR 172
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 86.6 bits (205), Expect = 2e-18
Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 1/167 (0%)
Frame = +3
Query: 60 LTMSARYDRAITVFSPDGHLLQVEYAQEAVRK-GSTAXXXXXXXXXXXXXEKKSVAKLQE 236
++ + +DR ITVFSP+G L QVEYA +A G T+ +KK KL +
Sbjct: 1 MSQARGFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLID 60
Query: 237 ERTVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLK 416
TV+ + + + G ADAR ++RA+ E + P+ + + + +A +
Sbjct: 61 ASTVKHVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIA 120
Query: 417 QKYTQSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATG 557
Q TQ RP G++ + D + P LF+ +P+G Y +KA + G
Sbjct: 121 QVSTQRAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAG 167
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 30.7 bits (66), Expect = 0.16
Identities = 14/72 (19%), Positives = 37/72 (51%)
Frame = +3
Query: 210 KKSVAKLQEERTVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEY 389
+ S L +TV+K+ ++ +++ AG AD + +EC+ H+L ++ +++
Sbjct: 80 RASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVLGMECRLHQLRNKELISVSA 139
Query: 390 ITRYIAGLKQKY 425
++ ++ + Y
Sbjct: 140 ASKILSNITYSY 151
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 27.1 bits (57), Expect = 2.0
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = -2
Query: 325 FINIRASA-VNPANAITT*S--SKRHIFLTVRSSCNLATDF 212
F+N SA +NP N + T SK+ +FLT SS ++ DF
Sbjct: 261 FMNTDISADINPINVLITALLISKKVLFLTKTSSASVLADF 301
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 4.6
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Frame = -2
Query: 490 PS*SNPPIKHEIPNGRRPLL*VYFCLRP--------AMYLVIYS-NVTGSSTVNLCD*HS 338
P+ P +IPN R +L + C P MYL S N T S + L HS
Sbjct: 375 PNFPEPKFFEDIPNTERCILSAFICSPPQLPLPNPLRMYLPCPSLNSTEVSVITLAPQHS 434
Query: 337 ICARFINIR-ASAVNPANAITT*SSKR 260
IN+ A A+ IT + KR
Sbjct: 435 FLNIVINLNPALALKSYTIITLLNGKR 461
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.0 bits (52), Expect = 8.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 488 IIVESSYQTRNTKWSTTIALSIFLFETCYVSCNILQCYWILD 363
II S Y+T N W++TI ++CN+LQ + +D
Sbjct: 549 IIYPSLYKTANEHWNSTIQA---------IACNVLQIFVDMD 581
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.0 bits (52), Expect = 8.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1
Query: 425 IFLFETCYVSCNILQC 378
I LF+TCY+ C + C
Sbjct: 567 IVLFDTCYMVCTYIVC 582
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,416
Number of Sequences: 5004
Number of extensions: 48867
Number of successful extensions: 131
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -