Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9j23
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80215-2|CAB02269.1|  253|Caenorhabditis elegans Hypothetical pr...   250   5e-67
Z79754-8|CAB02097.1|  248|Caenorhabditis elegans Hypothetical pr...   124   6e-29
AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome al...   120   1e-27
Z74030-2|CAA98441.1|  231|Caenorhabditis elegans Hypothetical pr...   104   4e-23
AF036694-1|AAB88344.1|  260|Caenorhabditis elegans Proteasome al...    98   3e-21
Z81035-5|CAB02738.1|  246|Caenorhabditis elegans Hypothetical pr...    79   3e-15
Z48544-9|CAA88436.2|  250|Caenorhabditis elegans Hypothetical pr...    76   2e-14
U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z83125-9|CAB05624.1|  338|Caenorhabditis elegans Hypothetical pr...    27   7.3  

>Z80215-2|CAB02269.1|  253|Caenorhabditis elegans Hypothetical
           protein C36B1.4 protein.
          Length = 253

 Score =  250 bits (612), Expect = 5e-67
 Identities = 115/168 (68%), Positives = 140/168 (83%)
 Frame = +3

Query: 75  RYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRK 254
           RYDRAIT+FSPDGHL QVEYAQEAV+KGSTA             EKKS+  LQ++RT+RK
Sbjct: 3   RYDRAITIFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDCIVIGVEKKSIPALQDDRTIRK 62

Query: 255 ICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQS 434
           I ++DDHV++AFAGL+ADAR+L++RA+IECQS+KLT+EDPVT+ YI+RYIA  KQ++TQS
Sbjct: 63  IHMIDDHVMLAFAGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQS 122

Query: 435 NGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVR 578
            GRRPFGIS LIGGFD+DG+P LF+TEPSG YYE+ ANATGR  K VR
Sbjct: 123 PGRRPFGISMLIGGFDHDGTPRLFKTEPSGAYYEYVANATGRGEKPVR 170


>Z79754-8|CAB02097.1|  248|Caenorhabditis elegans Hypothetical
           protein F25H2.9 protein.
          Length = 248

 Score =  124 bits (298), Expect = 6e-29
 Identities = 67/174 (38%), Positives = 100/174 (57%), Gaps = 4/174 (2%)
 Frame = +3

Query: 57  FLTMSARYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQE 236
           FLT S  YDR +  FSP+G L QVEYA EAV+ GST+             EK+S +KL  
Sbjct: 2   FLTRS-EYDRGVNTFSPEGRLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLMV 60

Query: 237 ERTVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLK 416
              + KI  +D H+ + FAGL AD+R L+ RAQIE Q+   T    + +E +T+ +A L 
Sbjct: 61  NDAIEKISKVDQHIGVTFAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLA 120

Query: 417 QKY----TQSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSA 566
            ++     +++  RPFG++ L  G D +G+  LF  +PSG + + KA + G ++
Sbjct: 121 LQFGDDDVKASMSRPFGVAMLFAGVDQEGA-KLFHLDPSGTFIDCKAKSIGAAS 173


>AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome alpha
           subunit protein 3 protein.
          Length = 250

 Score =  120 bits (288), Expect = 1e-27
 Identities = 62/165 (37%), Positives = 92/165 (55%), Gaps = 1/165 (0%)
 Frame = +3

Query: 66  MSARYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERT 245
           M+ RYD   T+FSP+G L QVEYA EA+    T              E+K+V KL ++  
Sbjct: 1   MARRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSV 60

Query: 246 V-RKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQK 422
           +  K+  L D++    AG+TADA ILIN  +    S++ +  + + +E + + +   KQ+
Sbjct: 61  MTEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQR 120

Query: 423 YTQSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATG 557
           YTQ  G+RPFG+S L  G+D      L+Q++PSG Y  WKA   G
Sbjct: 121 YTQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTGWKATCIG 165


>Z74030-2|CAA98441.1|  231|Caenorhabditis elegans Hypothetical
           protein D1054.2 protein.
          Length = 231

 Score =  104 bits (250), Expect = 4e-23
 Identities = 60/168 (35%), Positives = 90/168 (53%), Gaps = 2/168 (1%)
 Frame = +3

Query: 66  MSARYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERT 245
           M   Y  ++T FSP G L+Q+EYA  AV+ G  +             E        ++  
Sbjct: 1   MGDHYGFSLTTFSPSGKLMQIEYALNAVKNGQPSVGLRAKDGVVLATENVGSVLTDDQPK 60

Query: 246 VRKICLLDDHVVMAFAGLTADARILINRAQ-IECQSHKLTVEDPVTLEYITRYIAGLKQK 422
           V +I     H+   ++G+  D RIL+ +A+ I  +   +  E+  T++ +T  IA + Q+
Sbjct: 61  VEQI---SKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTD-IAAVMQE 116

Query: 423 YTQSNGRRPFGISCLIGGFDYD-GSPHLFQTEPSGIYYEWKANATGRS 563
           YTQS G RPFG S LI G+D + G P LFQ +PSG Y+ WKA A G++
Sbjct: 117 YTQSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKN 164


>AF036694-1|AAB88344.1|  260|Caenorhabditis elegans Proteasome alpha
           subunit protein 6 protein.
          Length = 260

 Score = 98.3 bits (234), Expect = 3e-21
 Identities = 56/168 (33%), Positives = 86/168 (51%)
 Frame = +3

Query: 75  RYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRK 254
           +YD  +TV+SP G L QVEYA EA+++GS                K++   L   +  +K
Sbjct: 5   QYDGDVTVWSPQGRLHQVEYAVEAMKQGSATVGIKSETHAVIVALKRAQNDLSSHQ--KK 62

Query: 255 ICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQS 434
           +  +D H  ++ AGL +D RIL    Q EC S +   +  V ++ +   +    Q  TQ 
Sbjct: 63  VYEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANTQY 122

Query: 435 NGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVR 578
            GRRPFG+  LI G+D DG+ H+ QT+PS         + G  +++ R
Sbjct: 123 YGRRPFGVGILIAGYDKDGA-HIIQTDPSAEVVSMHGTSIGARSQSAR 169


>Z81035-5|CAB02738.1|  246|Caenorhabditis elegans Hypothetical
           protein C15H11.7 protein.
          Length = 246

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 50/164 (30%), Positives = 77/164 (46%), Gaps = 1/164 (0%)
 Frame = +3

Query: 69  SARYDRAITVFSPDGHLLQVEYAQEAVRKGS-TAXXXXXXXXXXXXXEKKSVAKLQEERT 245
           SA +DR IT+FSP+G + QVEYA +A+   + TA             +K+    L    T
Sbjct: 6   SAGFDRHITIFSPEGRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADT 65

Query: 246 VRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKY 425
           V  +  +   V     G+  DA+  I RAQ E  S K      +  E + + +A L Q Y
Sbjct: 66  VTSVYQISQSVGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYY 125

Query: 426 TQSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATG 557
           TQ+   R  G + L   +D +  P +++ +P+G Y   K  + G
Sbjct: 126 TQNAEMRSLGCALLFISYDDEKGPEVYRVDPAGYYRGMKGVSVG 169


>Z48544-9|CAA88436.2|  250|Caenorhabditis elegans Hypothetical
           protein ZK945.2 protein.
          Length = 250

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 50/167 (29%), Positives = 75/167 (44%)
 Frame = +3

Query: 78  YDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRKI 257
           YD A + FSPDG + QVEYAQ+AV    T              +K   +KL  +    ++
Sbjct: 8   YDLAASTFSPDGRIFQVEYAQKAVDNAGTMIAIRGKNGVVVVADKLISSKLYTDNANPRM 67

Query: 258 CLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSN 437
             ++D+V +A AG   D   L N A  E         +P+ ++ I   +A     +T   
Sbjct: 68  FNVNDNVGVAVAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHTLGI 127

Query: 438 GRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVR 578
             RPFG       ++      LF  EPSG+ YE+KA A G+  +  +
Sbjct: 128 S-RPFGAGAFFMSWNKQTGGRLFLVEPSGLNYEYKAWAVGKHRQAAK 173


>U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical
           protein F55D10.1 protein.
          Length = 955

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +3

Query: 366 EDPVTLEYITRY---IAGLKQKYTQSNGRRPFGISCLIGGFDYDGSPHLFQTEP-SGIYY 533
           ++P+T E++TRY   +    Q +T SNGR+      +   FD   S     TEP +G YY
Sbjct: 689 KNPITKEFVTRYTTEVHSKNQSFTDSNGRQ-----AMERFFDGATSFEYSDTEPIAGNYY 743


>Z83125-9|CAB05624.1|  338|Caenorhabditis elegans Hypothetical
           protein T15D6.11 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 557 TSCISFPFIIYT--RRFSLEQVW*TIIVESSYQTRNT 453
           +SCI F F++YT   RF  + VW T+  E  YQ + T
Sbjct: 19  SSCIVFGFVLYTFAPRFHTKIVWDTLDGE-GYQFKET 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,239,344
Number of Sequences: 27780
Number of extensions: 281156
Number of successful extensions: 641
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)