Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9j21
(567 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 28 0.83
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ... 28 0.83
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 1.9
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 27 2.5
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 27 2.5
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 26 3.4
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 25 5.9
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 25 5.9
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 5.9
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 28.3 bits (60), Expect = 0.83
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 8 KGINTHAYTITIYL**NKEKNNIY*YVYYFE*SIK 112
K N H +I ++ N +K NIY Y ++ E SIK
Sbjct: 1758 KEANEHPSSIALHFVYNVDKENIYSYKFFSEYSIK 1792
>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 28.3 bits (60), Expect = 0.83
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +3
Query: 144 DTSLLFGIIKQVKQFYEVPIIYITKRDISDAVFKTMCGIREAVQDGSKD 290
DT+ + G+I+QV + +VP ++ ++ +F GIR + D +K+
Sbjct: 108 DTATISGLIQQVPTWIKVPAKFVISYPLTFHIFN---GIRHLIWDTTKE 153
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +3
Query: 417 IDAMSNRLKYFKKYTESNR---ASLSNMDQADLISEIEIVEAMHKE 545
I A N+LKY + + E ++ +LS + ++E+EI+E ++K+
Sbjct: 462 IKAFENKLKYIQSFHEKHQQLIGALSEVYGLTHLTELEILEHLNKK 507
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 26.6 bits (56), Expect = 2.5
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = -3
Query: 490 ILDKDARLDSVYFLKYFKRFDMASIVNDT---HCKMSFG*IFCISFLNTSISSITRNHSM 320
++ K ++ L F +F + V + C+ S G +F + N + SIT
Sbjct: 105 VVSKQGQVRVYNLLGEFHQFSLGKGVENIGIRECQFSEGGVFAL-LQNDTFISITGFEEP 163
Query: 319 WRSTIASI 296
WR T ASI
Sbjct: 164 WRKTYASI 171
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 26.6 bits (56), Expect = 2.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 565 SKRASLVSLCMASTISISEIRSAWSILDKD 476
+KRAS + ++ I E++ A+++LDKD
Sbjct: 31 AKRASSGAFAQLTSSQIQELKEAFALLDKD 60
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 26.2 bits (55), Expect = 3.4
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 204 IYITKRDISDAVFKTMCGIREAVQDGSKDRVIDAIVDLHIEWLRVI-DEIEVFKN 365
I +T ++ FK ++++D + + + + EW RVI DE + KN
Sbjct: 492 IVLTTYNVIAYEFKNKMAYDKSIEDNAPIKKFEHLPFFEAEWYRVILDEAQTIKN 546
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 25.4 bits (53), Expect = 5.9
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +3
Query: 291 RVIDAIVDLHIEWLRVIDEIEVFKNDMQNI--YPKDILQCVSFTIDAMSNRLKYFKKYTE 464
R ID+ + W+ + ++ +F+NDM D+L+ ++A+ R K Y+
Sbjct: 133 RRIDSTTQPPMSWMYLKAQVYIFQNDMDRAQKIAHDVLRLNPKNVEALVLRGKVM-YYSG 191
Query: 465 SNRASLSNMDQA 500
N ++++ +A
Sbjct: 192 ENAKAITHFQEA 203
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 25.4 bits (53), Expect = 5.9
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -2
Query: 149 GIINLVHCNCVVL*YFIQNSKRTSKYYFSLYFTINISLLYMHGCLFPLF 3
G+I L++ + V +N+ + + Y F L+ ++ S Y LF F
Sbjct: 194 GLIELLNQSFEVRMLTHENNNKKNSYVFRLFDRVSSSTFYFFNSLFAYF 242
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 5.9
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -3
Query: 358 NTSISSITRNHSMWRSTIASITLSFEPSCTAS 263
NT +SSIT + ++ ST S S PS TAS
Sbjct: 748 NTLLSSITSSSAIVSSTTVSNISSNLPSATAS 779
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,419
Number of Sequences: 5004
Number of extensions: 43907
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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