Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9j21
(567 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0812 - 7460448-7460507,7460595-7460672,7460772-7460981,746... 30 1.5
01_01_0419 - 3146851-3147339,3148428-3148663,3148847-3149793,315... 29 2.6
09_04_0585 - 18720407-18720693,18721411-18721513,18721642-187222... 29 3.4
10_08_0048 - 14441540-14441620,14442044-14442111,14442275-144424... 27 7.9
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 27 7.9
04_04_0221 - 23710739-23710964,23711050-23711158,23711371-237114... 27 7.9
04_04_0219 - 23703579-23703747,23703836-23703944,23704170-237042... 27 7.9
>12_01_0812 -
7460448-7460507,7460595-7460672,7460772-7460981,
7461095-7461142,7461270-7461455,7461653-7461656,
7461766-7461893
Length = 237
Score = 29.9 bits (64), Expect = 1.5
Identities = 24/112 (21%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
Frame = +3
Query: 165 IIKQVKQFYEVPIIYITKRDISDAVFKTMCGIREAVQDGSKDRVIDAIVDLHIEWL--RV 338
+I + + F+ + YI ++ + +C R+ V KD++ +VD+ + +V
Sbjct: 72 VISETRFFFYLDRYYILRKSLVPLEQLNLCSFRDQVYSELKDKITRTVVDMINDERDGKV 131
Query: 339 IDEIEVFKNDMQNIYPKDILQCVSFTIDAMSNRLKYFKKYTESNRASLSNMD 494
ID ++ K D+ ++Y + L + +D N + + SN+A S ++
Sbjct: 132 IDR-DLLK-DVLDVYVQIGLGMECYEVD-FENAFRESTRNYYSNKAQTSILE 180
>01_01_0419 -
3146851-3147339,3148428-3148663,3148847-3149793,
3150258-3150356,3151128-3151501
Length = 714
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +3
Query: 294 VIDAIVDLHIEWLRVIDEIEVFKNDMQNIYPKDILQ 401
V D+ DLH +LRV+D + ND++ ++PK ILQ
Sbjct: 325 VPDSFADLH--FLRVLDLAD---NDLEGLFPKRILQ 355
>09_04_0585 -
18720407-18720693,18721411-18721513,18721642-18722263,
18722602-18722689,18722815-18722892,18723116-18723191,
18723697-18723755,18723907-18723964,18724070-18724216
Length = 505
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +3
Query: 165 IIKQVKQFYEVPIIYITKRDISDAVFKTMCGIREAVQDGSK 287
++ K+ Y PIIY+T+ I++ K++ I EA++DG +
Sbjct: 392 LLLYTKRRYNNPIIYVTENGIAEGNNKSL-PITEALKDGHR 431
>10_08_0048 -
14441540-14441620,14442044-14442111,14442275-14442493,
14442506-14444508,14447541-14448410,14448533-14448576,
14449920-14450093
Length = 1152
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +3
Query: 105 VLKNYAITMDQVNDTSLLFGIIKQVKQFYEVPIIYITKRDISDAVFKTMCGIREAVQDGS 284
++K ++T + + SLLFG K+ +Q E+ K D+S + M I E Q+G
Sbjct: 599 LMKPNSLTFNIILTASLLFGTTKKAEQLLELMPRIGLKPDVSSLI--VMARIYE--QNGH 654
Query: 285 KDRV 296
+D +
Sbjct: 655 RDEI 658
>05_06_0132 + 25893241-25893435,25894266-25894487,25894567-25894863,
25894944-25895111,25895201-25895368,25895456-25895536,
25895704-25895770,25895874-25895971,25896587-25896659,
25896753-25896823,25896919-25896968,25897698-25897810,
25898182-25898300,25898629-25898721,25899025-25899051,
25899422-25899823,25900467-25900513,25900612-25900651,
25900733-25900795,25900881-25901018,25901873-25902031,
25902111-25902164,25902324-25902392,25902514-25902643,
25902909-25902949,25903133-25903178,25903200-25903357,
25903560-25903605,25903702-25903853,25904022-25904243
Length = 1202
Score = 27.5 bits (58), Expect = 7.9
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = +3
Query: 96 LNKVLKNYAITMDQVNDTSLLFGIIKQVKQFYEVPIIYITKRDISDAVFK--TMCGIREA 269
LN V++ + + + S ++GI K FY + +T + + D + T+ G
Sbjct: 820 LNTVIRELVCGLAHMYNVSKIYGIQNGYKGFYSSNYLTLTPKSVDDIHKRGGTVLGTSRG 879
Query: 270 VQDGSKDRVIDAIVDLHIEWLRVI 341
D K ++D I D I + +I
Sbjct: 880 GHDTKK--IVDNIQDRGINQVYII 901
>04_04_0221 -
23710739-23710964,23711050-23711158,23711371-23711473,
23711568-23711599,23711707-23711924,23711994-23712109,
23714696-23714843,23715713-23715800,23715935-23716019
Length = 374
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 177 VKQFYEVPIIYITKRDISDAVFKTMCGIREAVQDGSK 287
VK+ Y P IYIT+ + + KTM + EA++D ++
Sbjct: 249 VKENYGNPTIYITENGVDEVNNKTM-PLEEALKDDTR 284
>04_04_0219 -
23703579-23703747,23703836-23703944,23704170-23704272,
23704365-23704396,23704855-23705072,23706295-23706618,
23706982-23707069,23707179-23707263
Length = 375
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +3
Query: 165 IIKQVKQFYEVPIIYITKRDISDAVFKTMCGIREAVQD 278
++ +K+ Y P IYIT+ + + KTM ++EA++D
Sbjct: 265 LLLHIKENYGNPTIYITENGVDEINNKTM-RLKEALKD 301
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,523,986
Number of Sequences: 37544
Number of extensions: 228557
Number of successful extensions: 499
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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