Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9j21
(567 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72502-1|CAA96585.2| 430|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p... 28 5.4
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z19152-10|CAA79545.2| 348|Caenorhabditis elegans Hypothetical p... 27 7.1
AF024499-3|AAB70357.1| 374|Caenorhabditis elegans Hypothetical ... 27 7.1
AF016438-7|AAQ62454.1| 451|Caenorhabditis elegans Nuclear hormo... 27 7.1
AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol 1,4,... 27 9.4
AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol 1,4,... 27 9.4
AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol 1,4,... 27 9.4
AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol 1,4,... 27 9.4
AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol 1,4,... 27 9.4
AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol trip... 27 9.4
AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol trip... 27 9.4
AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol trip... 27 9.4
AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol trip... 27 9.4
>Z72502-1|CAA96585.2| 430|Caenorhabditis elegans Hypothetical
protein C08B6.2 protein.
Length = 430
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 376 FCISFLNTSISSITRNHSMWRSTIASITLSFEPSCTASRI-PHMVLNTASE 227
FC SFL SI N ++ TI + + EPS S I + NT+++
Sbjct: 17 FCGSFLQNVTESIRENEQNYKKTINNKLIGLEPSENISDICDASLFNTSTD 67
>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +3
Query: 453 KYTESNRASLSNMDQADL---ISEIEIVEAMHKETNEA 557
KY+ S+ S SN D D S+ + VEAM K N+A
Sbjct: 83 KYSSSSEFSSSNSDACDSDGETSDTDAVEAMFKNENDA 120
>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +3
Query: 453 KYTESNRASLSNMDQADL---ISEIEIVEAMHKETNEA 557
KY+ S+ S SN D D S+ + VEAM K N+A
Sbjct: 83 KYSSSSEFSSSNSDACDSDGETSDTDAVEAMFKNENDA 120
>Z19152-10|CAA79545.2| 348|Caenorhabditis elegans Hypothetical
protein B0464.8 protein.
Length = 348
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 330 LRVIDEIEVFKNDMQNIYPKDILQCVSFTIDAMSNRLKYFKKYTE 464
L + D IEV+ N + N+ + +LQ ++ +S +KY K E
Sbjct: 72 LFINDVIEVYDNKIPNVKLQHMLQLLNSQKGVLSRFIKYLKNRVE 116
>AF024499-3|AAB70357.1| 374|Caenorhabditis elegans Hypothetical
protein F42G2.5 protein.
Length = 374
Score = 27.5 bits (58), Expect = 7.1
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 1/108 (0%)
Frame = -3
Query: 550 LVSLCMASTISISEIRSAWSILDKDARLDSVYFLKYFKRFDMASIVNDTHCKMSFG*IFC 371
LV C+A +I +S++ S W + D + + + D S + C + F
Sbjct: 87 LVQSCVAPSIDVSDLESVWKNVKPDELTYNRLVVTFVDNTDSKSNIECEICTLEFS---- 142
Query: 370 ISFLNTSISSITR-NHSMWRSTIASITLSFEPSCTASRIPHMVLNTAS 230
S ++ I I + HS+ +S + + + C R V + AS
Sbjct: 143 -SVVDNQIPRILQCGHSICQSCASKLAKNCVILCPFCRNETNVSSVAS 189
>AF016438-7|AAQ62454.1| 451|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 128, isoform b protein.
Length = 451
Score = 27.5 bits (58), Expect = 7.1
Identities = 24/112 (21%), Positives = 49/112 (43%)
Frame = +3
Query: 99 NKVLKNYAITMDQVNDTSLLFGIIKQVKQFYEVPIIYITKRDISDAVFKTMCGIREAVQD 278
N L+ ++ ++ + T L I+ +K+ + +Y ++D V K + E D
Sbjct: 202 NDSLEKISLKLESLRTTELN-NKIRMLKKLGKEETMYTWEQDFL-RVIKWFANLDE-FND 258
Query: 279 GSKDRVIDAIVDLHIEWLRVIDEIEVFKNDMQNIYPKDILQCVSFTIDAMSN 434
+D +++ + I W + E +NI+ K +L C + T M+N
Sbjct: 259 LDEDLMLNIVKAAWIPWTILEKLYETSDYQRKNIFSKTVLMCGNDTCMDMNN 310
>AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2857
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 HCKMSFG*IFCISFLNTSISSITRNHS--MWRSTIASITLSF 284
+C + F IF L I+S+TRN+ +W +A I L F
Sbjct: 2553 YCILLFDIIFTEETLQNVIASVTRNYQSIVWTGLLALILLYF 2594
>AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2836
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 HCKMSFG*IFCISFLNTSISSITRNHS--MWRSTIASITLSF 284
+C + F IF L I+S+TRN+ +W +A I L F
Sbjct: 2532 YCILLFDIIFTEETLQNVIASVTRNYQSIVWTGLLALILLYF 2573
>AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2892
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 HCKMSFG*IFCISFLNTSISSITRNHS--MWRSTIASITLSF 284
+C + F IF L I+S+TRN+ +W +A I L F
Sbjct: 2588 YCILLFDIIFTEETLQNVIASVTRNYQSIVWTGLLALILLYF 2629
>AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2846
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 HCKMSFG*IFCISFLNTSISSITRNHS--MWRSTIASITLSF 284
+C + F IF L I+S+TRN+ +W +A I L F
Sbjct: 2542 YCILLFDIIFTEETLQNVIASVTRNYQSIVWTGLLALILLYF 2583
>AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2846
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 HCKMSFG*IFCISFLNTSISSITRNHS--MWRSTIASITLSF 284
+C + F IF L I+S+TRN+ +W +A I L F
Sbjct: 2542 YCILLFDIIFTEETLQNVIASVTRNYQSIVWTGLLALILLYF 2583
>AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform e protein.
Length = 2857
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 HCKMSFG*IFCISFLNTSISSITRNHS--MWRSTIASITLSF 284
+C + F IF L I+S+TRN+ +W +A I L F
Sbjct: 2553 YCILLFDIIFTEETLQNVIASVTRNYQSIVWTGLLALILLYF 2594
>AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform f protein.
Length = 2846
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 HCKMSFG*IFCISFLNTSISSITRNHS--MWRSTIASITLSF 284
+C + F IF L I+S+TRN+ +W +A I L F
Sbjct: 2542 YCILLFDIIFTEETLQNVIASVTRNYQSIVWTGLLALILLYF 2583
>AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform d protein.
Length = 2836
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 HCKMSFG*IFCISFLNTSISSITRNHS--MWRSTIASITLSF 284
+C + F IF L I+S+TRN+ +W +A I L F
Sbjct: 2532 YCILLFDIIFTEETLQNVIASVTRNYQSIVWTGLLALILLYF 2573
>AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform a protein.
Length = 2892
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 403 HCKMSFG*IFCISFLNTSISSITRNHS--MWRSTIASITLSF 284
+C + F IF L I+S+TRN+ +W +A I L F
Sbjct: 2588 YCILLFDIIFTEETLQNVIASVTRNYQSIVWTGLLALILLYF 2629
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,688,046
Number of Sequences: 27780
Number of extensions: 233203
Number of successful extensions: 607
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -