Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9j20
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282...    29   3.2  
07_03_1414 - 26403361-26403969                                         29   3.2  
07_03_1422 + 26462871-26463434,26463772-26463897                       27   9.8  
06_02_0196 - 12898050-12898553,12898689-12900824                       27   9.8  

>10_08_0838 - 20927020-20927207,20927288-20927491,20927654-20928297,
            20928549-20928788,20928884-20928978,20929087-20929434,
            20929824-20930042,20930422-20930487,20931191-20931362,
            20931456-20931703,20931933-20932073,20932238-20932330,
            20932421-20932471,20933571-20933693,20933793-20934035,
            20934131-20934211,20935245-20935340,20935535-20936320,
            20936443-20937012,20937322-20937427,20938102-20938206,
            20938311-20938432,20939321-20939413,20940081-20940104
          Length = 1685

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 335  LRSTSLARAIVSSVPG*SPHEVTLL*YINCYSTISGY 225
            +R TSL+R   S+    SPH++     ++CY+T + Y
Sbjct: 1281 VRVTSLSRGYTSNRGLRSPHQIQACAAVSCYATCTSY 1317


>07_03_1414 - 26403361-26403969
          Length = 202

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = -3

Query: 568 LYLTSGVSESTRLQGSRLVRTVVDSSNSLRLVPHIIMYIHGTKRTSFQGLTSTARY*TLR 389
           L  ++ V+   R  G RLVR+  +    +RL  H I+Y + +  TS     +  +   L 
Sbjct: 20  LLSSASVANGGRSGGRRLVRSYDEPCKEMRLYLHDILYDY-SNSTSNSTSAAATKPTALS 78

Query: 388 H*VSRRIFLVGRMV 347
             VS   F  GRMV
Sbjct: 79  AAVSNPGFFFGRMV 92


>07_03_1422 + 26462871-26463434,26463772-26463897
          Length = 229

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -3

Query: 586 IAVSFVLYLTSGVSESTRLQGSRLVRTVVDSSNSLRLVPHIIMYIHGTKRTSFQGLTST 410
           +A  F+L LTS      R    R VR+  +    +RL  H I+Y +    T+     +T
Sbjct: 12  VAAIFLLSLTSASVVHGRSSRRRFVRSYDEPCMEMRLYLHDILYDYSNSTTNSTSAAAT 70


>06_02_0196 - 12898050-12898553,12898689-12900824
          Length = 879

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 611 DTNRFFLEHRCLVRIVSDVWRLGI--DAPSRFTTGADGR 501
           +T R +LE++  V ++ DVW   +  D+   F  G  GR
Sbjct: 271 ETTRSYLENKRYVLVLDDVWNANVWFDSKDAFEDGNIGR 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,812,907
Number of Sequences: 37544
Number of extensions: 308886
Number of successful extensions: 704
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)