Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9j19
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   2.1  
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    26   3.7  
SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.7  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   4.9  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    26   4.9  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   6.4  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   8.5  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = +2

Query: 473  KGNVAYY-NESENHSMSYFTQLIWGES----DSVGCGRARFYL 586
            K N+ +  N+S N++ +Y  QLI G      DSV   RARF L
Sbjct: 957  KSNITFSANDSANYNWNYVDQLICGFETYLPDSVKYWRARFVL 999


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 373 CESRTKHRHNFGNYNRP*CKKFRGYVVYADT 465
           CES T  R  FG   R    +F+ +VV+A T
Sbjct: 272 CESATSSRQGFGLERRTNQSQFQHFVVWAFT 302


>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -3

Query: 550 TFAPDQLCEIAHAVIL*FIVIGD-VSLIRQYRHKPHIH 440
           TF P      AH        I + V+LIR+Y HK H H
Sbjct: 65  TFVPKDSVRYAHLPYAQAFDIAEIVNLIREYSHKYHKH 102


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +2

Query: 263 KEIIWSQELANFAQRWVDQCDQNIQPDKEDICRDLVNAKVGQ--NIAT-ILGTTTGLNVK 433
           K ++   EL +F +       QNI PD   + ++LV     Q    AT +  +   +N++
Sbjct: 485 KVVMCLSELGDFGKLATYTSQQNITPDYVSLLQNLVRVNPDQAAEFATQMFNSNPSINLE 544

Query: 434 SFVDMW 451
             VD++
Sbjct: 545 KIVDIF 550


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1009

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 188  VSRINERRNFVAMGLANFLPQAADMKEIIWSQELANFAQRW 310
            ++R+ +   F    +A  + Q  ++KEIIW QE    A  W
Sbjct: 917  ITRVEQLHPFGWKQMAANISQYPNLKEIIWCQEEPLNAGAW 957


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 243 KKFASPIATKFLRSFILLTIWKISALVNNTV 151
           K FA PI++ FL    +  I  + +L +NT+
Sbjct: 41  KSFAQPISSSFLNRISITKIDDVDSLSDNTL 71


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 83  CRNHTLCLYSSTGPGDQCDAYDKTVLLTSAEIFQIVSRIN 202
           C N  L   SS+G     +  +KT L T+  +  I+SR++
Sbjct: 682 CNNAYLLCISSSGMVYAWNVVNKTALFTANSLAPILSRVS 721


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,473,369
Number of Sequences: 5004
Number of extensions: 49711
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)