Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9j19
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.57 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.57 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.0  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 134 IGRLVLLKSTNKAYDCGIFYSNQLYFCTKQSCKLIIRLILVLS 6
           +G LV L S NK ++  + Y + L  CT  SC  ++  I++ S
Sbjct: 295 LGALVALGSYNK-FNNNV-YKDALIVCTVNSCTSMLSGIVIFS 335


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 134 IGRLVLLKSTNKAYDCGIFYSNQLYFCTKQSCKLIIRLILVLS 6
           +G LV L S NK ++  + Y + L  CT  SC  ++  I++ S
Sbjct: 348 LGALVALGSYNK-FNNNV-YKDALIVCTVNSCTSMLSGIVIFS 388


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 260 MKEIIWSQELANFAQRWVDQCDQNIQPDKEDICR 361
           MK ++   E      R +  C+ ++QP K++ CR
Sbjct: 370 MKPLVRQPEDTMSVDR-MQHCELHMQPRKKNCCR 402


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 260 MKEIIWSQELANFAQRWVDQCDQNIQPDKEDICR 361
           MK ++   E      R +  C+ ++QP K++ CR
Sbjct: 370 MKPLVRQPEDTMSVDR-MQHCELHMQPRKKNCCR 402


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +2

Query: 59  SIADYCKICRNHTLC 103
           ++ DYC I   H +C
Sbjct: 357 ALEDYCNIVATHLVC 371


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,755
Number of Sequences: 438
Number of extensions: 3655
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)