Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9j18
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   2.3  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    27   3.1  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    26   5.4  
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce...    25   9.5  

>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 496 NKHSFSSSTLVKTSNGKLWAVYMTDFSTKYNFHYVY 603
           N  +FS S L K SNG L+  +    + KY F   Y
Sbjct: 873 NNATFSPSLLYKASNGDLYVNHTGAGADKYRFSLNY 908


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 242 KNNLQHTKESKIIQFTDSHL*ILSQFRRNTD-ECVEFIE 355
           KN +   K     QF  SHL ++ +  +N+D EC + IE
Sbjct: 264 KNEVTVIKGPMFFQFKPSHLILIEESWKNSDQECRQIIE 302


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -3

Query: 476 ELMTLYSHLANMTVIIFVFDH--FKITMTISF 387
           EL+T+Y H    T ++  +DH  +++ + ISF
Sbjct: 849 ELLTVYEHFDIATTLLSCWDHQLYQVILHISF 880


>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 505 SFSSSTLVKTSNGKLWAVYMTDFSTKY 585
           S     L+KT++GK W +  ++F+  Y
Sbjct: 325 SIDERPLLKTAHGKFWNIGSSEFAPVY 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,630
Number of Sequences: 5004
Number of extensions: 48945
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)