Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9j12
(677 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC002719-1|AAH02719.1| 258|Homo sapiens eukaryotic translation ... 58 3e-08
AK023388-1|BAB14555.1| 258|Homo sapiens protein ( Homo sapiens ... 58 3e-08
U97670-1|AAC78729.1| 258|Homo sapiens eukaryotic translation in... 55 2e-07
BC014001-1|AAH14001.2| 445|Homo sapiens UBX domain containing 8... 31 2.8
BC006145-1|AAH06145.2| 445|Homo sapiens UBX domain containing 8... 31 2.8
BC001069-1|AAH01069.2| 445|Homo sapiens UBX domain containing 8... 31 2.8
AB088120-1|BAC22491.1| 445|Homo sapiens ETEA protein. 31 2.8
AB020694-1|BAA74910.1| 443|Homo sapiens KIAA0887 protein protein. 31 2.8
>BC002719-1|AAH02719.1| 258|Homo sapiens eukaryotic translation
initiation factor 3, subunit 1 alpha, 35kDa protein.
Length = 258
Score = 58.0 bits (134), Expect = 3e-08
Identities = 41/125 (32%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
Frame = +2
Query: 326 SWDADNFEPKLPTT------LAASNKWEGEDEDDNVXXXXXXXXXXXXXXXXXX--AAXX 481
SWDAD F + P A ++WEGEDED++V
Sbjct: 13 SWDADAFSVEDPVRKVGGGGTAGGDRWEGEDEDEDVKDNWDDDDDEKKEEAEVKPEVKIS 72
Query: 482 XXXXXXXXIHDKIXXXXXXXXXXXXXLVTEKTAEEMTPEQKLAEKLRQQKLQEESDLRLA 661
I +K L + + +TPE++LA+KLR +KLQEESDL LA
Sbjct: 73 EKKKIAEKIKEKERQQKKRQEEIKKRLEEPEEPKVLTPEEQLADKLRLKKLQEESDLELA 132
Query: 662 METFG 676
ETFG
Sbjct: 133 KETFG 137
>AK023388-1|BAB14555.1| 258|Homo sapiens protein ( Homo sapiens
cDNA FLJ13326 fis, clone OVARC1001766, highly similar to
Homo sapiens eukaryotic translation initiation factor
eIF3, p35 ).
Length = 258
Score = 58.0 bits (134), Expect = 3e-08
Identities = 41/125 (32%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
Frame = +2
Query: 326 SWDADNFEPKLPTT------LAASNKWEGEDEDDNVXXXXXXXXXXXXXXXXXX--AAXX 481
SWDAD F + P A ++WEGEDED++V
Sbjct: 13 SWDADAFSVEDPVRKVGGGGTAGGDRWEGEDEDEDVKDNWDDDDDEKKEEAEVKPEVKIS 72
Query: 482 XXXXXXXXIHDKIXXXXXXXXXXXXXLVTEKTAEEMTPEQKLAEKLRQQKLQEESDLRLA 661
I +K L + + +TPE++LA+KLR +KLQEESDL LA
Sbjct: 73 EKKKIAEKIKEKERQQKKRQEEIKKRLEEPEEPKVLTPEEQLADKLRLKKLQEESDLELA 132
Query: 662 METFG 676
ETFG
Sbjct: 133 KETFG 137
>U97670-1|AAC78729.1| 258|Homo sapiens eukaryotic translation
initiation factor eIF3, p35 subunit protein.
Length = 258
Score = 55.2 bits (127), Expect = 2e-07
Identities = 40/125 (32%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Frame = +2
Query: 326 SWDADNFEPKLPTT------LAASNKWEGEDEDDNVXXXXXXXXXXXXXXXXXX--AAXX 481
SWDAD F + P A ++W GEDED++V
Sbjct: 13 SWDADAFSVEDPVRKVGGGGTAGGDRWGGEDEDEDVKDNWDDDDDEKKEEAEVKPEVKIS 72
Query: 482 XXXXXXXXIHDKIXXXXXXXXXXXXXLVTEKTAEEMTPEQKLAEKLRQQKLQEESDLRLA 661
I +K L + + +TPE++LA+KLR +KLQEESDL LA
Sbjct: 73 EKKKIAEKIKEKERQQKKRQEEIKKRLEEPEEPKVLTPEEQLADKLRLKKLQEESDLELA 132
Query: 662 METFG 676
ETFG
Sbjct: 133 KETFG 137
>BC014001-1|AAH14001.2| 445|Homo sapiens UBX domain containing 8
protein.
Length = 445
Score = 31.5 bits (68), Expect = 2.8
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 569 EKTAEEMTPEQKLAEKLRQQKLQEESDLRL 658
++ EE +QKLAE+ R+Q LQEE + +L
Sbjct: 318 KRRKEEEVQQQKLAEERRRQNLQEEKERKL 347
>BC006145-1|AAH06145.2| 445|Homo sapiens UBX domain containing 8
protein.
Length = 445
Score = 31.5 bits (68), Expect = 2.8
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 569 EKTAEEMTPEQKLAEKLRQQKLQEESDLRL 658
++ EE +QKLAE+ R+Q LQEE + +L
Sbjct: 318 KRRKEEEVQQQKLAEERRRQNLQEEKERKL 347
>BC001069-1|AAH01069.2| 445|Homo sapiens UBX domain containing 8
protein.
Length = 445
Score = 31.5 bits (68), Expect = 2.8
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 569 EKTAEEMTPEQKLAEKLRQQKLQEESDLRL 658
++ EE +QKLAE+ R+Q LQEE + +L
Sbjct: 318 KRRKEEEVQQQKLAEERRRQNLQEEKERKL 347
>AB088120-1|BAC22491.1| 445|Homo sapiens ETEA protein.
Length = 445
Score = 31.5 bits (68), Expect = 2.8
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 569 EKTAEEMTPEQKLAEKLRQQKLQEESDLRL 658
++ EE +QKLAE+ R+Q LQEE + +L
Sbjct: 318 KRRKEEEVQQQKLAEERRRQNLQEEKERKL 347
>AB020694-1|BAA74910.1| 443|Homo sapiens KIAA0887 protein protein.
Length = 443
Score = 31.5 bits (68), Expect = 2.8
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 569 EKTAEEMTPEQKLAEKLRQQKLQEESDLRL 658
++ EE +QKLAE+ R+Q LQEE + +L
Sbjct: 316 KRRKEEEVQQQKLAEERRRQNLQEEKERKL 345
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,927,674
Number of Sequences: 237096
Number of extensions: 1444150
Number of successful extensions: 3468
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3468
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -