Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9j09
         (577 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9UDC3 Cluster: Neuronal-type voltage-gated CA2+ channe...    35   1.2  
UniRef50_Q01668 Cluster: Voltage-dependent L-type calcium channe...    35   1.2  
UniRef50_Q99246 Cluster: Voltage-dependent L-type calcium channe...    34   2.8  
UniRef50_A3LZJ2 Cluster: Predicted protein; n=3; Saccharomycetal...    33   3.6  

>UniRef50_Q9UDC3 Cluster: Neuronal-type voltage-gated CA2+ channel
           class D alpha 1 subunit, VGCC class D alpha 1; n=21;
           Theria|Rep: Neuronal-type voltage-gated CA2+ channel
           class D alpha 1 subunit, VGCC class D alpha 1 - Homo
           sapiens (Human)
          Length = 293

 Score = 35.1 bits (77), Expect = 1.2
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +2

Query: 287 PPPDVPVNDESQPKSR---EYPHKQRIRNLRRLIAEGKVNPTPETLIFFLCNK 436
           PP DVPV +E + +     E P   R R +  L  + K+ P PE   FF+ +K
Sbjct: 73  PPCDVPVGEEEEEEEEDEPEVPAGPRPRRISELNMKEKIAPIPEGSAFFILSK 125


>UniRef50_Q01668 Cluster: Voltage-dependent L-type calcium channel
           subunit alpha-1D; n=80; Coelomata|Rep: Voltage-dependent
           L-type calcium channel subunit alpha-1D - Homo sapiens
           (Human)
          Length = 2161

 Score = 35.1 bits (77), Expect = 1.2
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +2

Query: 287 PPPDVPVNDESQPKSR---EYPHKQRIRNLRRLIAEGKVNPTPETLIFFLCNK 436
           PP DVPV +E + +     E P   R R +  L  + K+ P PE   FF+ +K
Sbjct: 819 PPCDVPVGEEEEEEEEDEPEVPAGPRPRRISELNMKEKIAPIPEGSAFFILSK 871


>UniRef50_Q99246 Cluster: Voltage-dependent L-type calcium channel
           subunit alpha-1D; n=87; Euteleostomi|Rep:
           Voltage-dependent L-type calcium channel subunit
           alpha-1D - Mus musculus (Mouse)
          Length = 2179

 Score = 33.9 bits (74), Expect = 2.8
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +2

Query: 287 PPPDVPVNDESQPKSR---EYPHKQRIRNLRRLIAEGKVNPTPETLIFFLCNK 436
           PP DVPV +E + +     E P   R R    L  + K+ P PE   FF+ +K
Sbjct: 839 PPCDVPVGEEEEEEEEDEPEVPAGPRPRRTSELNMKEKIAPIPEGSAFFILSK 891


>UniRef50_A3LZJ2 Cluster: Predicted protein; n=3;
           Saccharomycetales|Rep: Predicted protein - Pichia
           stipitis (Yeast)
          Length = 1852

 Score = 33.5 bits (73), Expect = 3.6
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
 Frame = -2

Query: 477 HGLLFIFRSSEIANLLQRKKI---SVSGVGFTFPSAMSRRKFRMRC 349
           + LLFI RS E  N  +RK++    V+G+  TFPS++S R F + C
Sbjct: 96  YSLLFISRSVERLNAEERKQLIPQIVAGIS-TFPSSVSARLFNVLC 140


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 472,758,558
Number of Sequences: 1657284
Number of extensions: 7756049
Number of successful extensions: 18560
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18547
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39571085965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)