Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9j09
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0029 - 8319233-8319408,8319516-8319584,8319754-8319838,832...    28   4.6  
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497...    28   6.1  

>10_05_0029 -
           8319233-8319408,8319516-8319584,8319754-8319838,
           8320112-8320225
          Length = 147

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = +2

Query: 275 IIGIPPPDVPVNDESQPKSREYPHKQRIRNLRRLIAEG 388
           I+ + PP  P+ ++  P+   +P+++R+R L+ ++  G
Sbjct: 7   ILNLNPPTSPLPEQQSPQGFCHPNRRRLRFLQGILRYG 44


>07_03_0493 +
           18747427-18748356,18748594-18748697,18749586-18749795,
           18749992-18750597,18750819-18751095,18751163-18751310,
           18751957-18752044,18752167-18752284
          Length = 826

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 268 QLYYRYTTTRRPGKRRVSAQVSRVPS*ATHTELAATHR*RKSEPHT*NTNFLPLQ 432
           +LY+R    ++   +RVSAQ S  P    H +    H   + + H  N NFL ++
Sbjct: 659 RLYWRQNDEQQNADQRVSAQCSLAPVSHLHQQEGWQHSSFEHQHHE-NQNFLEME 712


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,559,609
Number of Sequences: 37544
Number of extensions: 210186
Number of successful extensions: 460
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)