Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9j09
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z92786-6|CAB07208.1|  569|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AL132895-3|CAC14400.1|  676|Caenorhabditis elegans Hypothetical ...    27   7.2  
U40059-1|AAA81138.3|  867|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical protein
            F13D2.1 protein.
          Length = 1342

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +2

Query: 242  RPWHPVMWDSSIIGIPPPDVPVNDESQPKSREYPHKQRIRNLRRLIAEGKVN 397
            R  HPV     ++ I  PDVP +D    + R   H  R R +RR+I E  V+
Sbjct: 1141 RATHPVQGLVGMLLIAHPDVPRSDVLVRRRRH--HHTRTRFVRRIIDESAVD 1190


>Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical protein
            F13D2.1 protein.
          Length = 1342

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +2

Query: 242  RPWHPVMWDSSIIGIPPPDVPVNDESQPKSREYPHKQRIRNLRRLIAEGKVN 397
            R  HPV     ++ I  PDVP +D    + R   H  R R +RR+I E  V+
Sbjct: 1141 RATHPVQGLVGMLLIAHPDVPRSDVLVRRRRH--HHTRTRFVRRIIDESAVD 1190


>Z92786-6|CAB07208.1|  569|Caenorhabditis elegans Hypothetical
           protein F47H4.9 protein.
          Length = 569

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 296 DVPVNDESQPKSREYPHKQRIRN-LRRLIAEGKVNPTP 406
           D  ++ E +P+S    HK  +RN LR L +E  ++P P
Sbjct: 130 DYDIDSELEPRSLAEMHKDIMRNILRELNSEPTISPGP 167


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical
           protein T04F3.1 protein.
          Length = 3517

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 227 ERAVRRPWHPVMWDSSIIGIPPPDVPVN 310
           ER   R       DSS+IGIPP D+ +N
Sbjct: 686 ERKASRDLRRRASDSSMIGIPPADIDLN 713


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical
           protein T04F3.1 protein.
          Length = 3517

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 227 ERAVRRPWHPVMWDSSIIGIPPPDVPVN 310
           ER   R       DSS+IGIPP D+ +N
Sbjct: 686 ERKASRDLRRRASDSSMIGIPPADIDLN 713


>AL132895-3|CAC14400.1|  676|Caenorhabditis elegans Hypothetical
           protein Y59A8A.3 protein.
          Length = 676

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +2

Query: 284 IPPPDVPVNDESQPKSREYPHKQRIRNLRRLIAEGKVNPTPETLIFFLCNKFAISDERK 460
           IP P  P   +S PK R+  + + +   + L     +    E  I FL   F  SD +K
Sbjct: 129 IPAPAAPTTQKSSPKERKSVNLKDLDQKKVLNKLSGLPELDEAYIQFLAGAFRDSDAQK 187


>U40059-1|AAA81138.3|  867|Caenorhabditis elegans Hypothetical
           protein K03C7.1 protein.
          Length = 867

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 290 PPDVPVNDESQPKSREYPHKQRIRNLRRLIAEGKVNPTPETLI 418
           P D P  DE + K +   H++R +  ++ + E +  PTPE ++
Sbjct: 544 PEDEPAEDEPK-KKKPKKHRKRPKK-KKPVVEPEKEPTPEPVV 584


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,129,595
Number of Sequences: 27780
Number of extensions: 194225
Number of successful extensions: 485
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)