Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9j09
(577 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 23 1.6
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 3.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 3.8
AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor typ... 22 3.8
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 6.6
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 23.4 bits (48), Expect = 1.6
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -3
Query: 179 PHRHHRSPYH 150
PH+HH S YH
Sbjct: 318 PHQHHPSQYH 327
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.8
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -1
Query: 88 TVSCRRRMVYYFY 50
T+ RRR +YYF+
Sbjct: 187 TIQIRRRTLYYFF 199
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.8
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -1
Query: 88 TVSCRRRMVYYFY 50
T+ RRR +YYF+
Sbjct: 187 TIQIRRRTLYYFF 199
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.8
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -1
Query: 88 TVSCRRRMVYYFY 50
T+ RRR +YYF+
Sbjct: 187 TIQIRRRTLYYFF 199
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.8
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -1
Query: 88 TVSCRRRMVYYFY 50
T+ RRR +YYF+
Sbjct: 187 TIQIRRRTLYYFF 199
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.8
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -1
Query: 88 TVSCRRRMVYYFY 50
T+ RRR +YYF+
Sbjct: 187 TIQIRRRTLYYFF 199
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.8
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -1
Query: 88 TVSCRRRMVYYFY 50
T+ RRR +YYF+
Sbjct: 187 TIQIRRRTLYYFF 199
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 3.8
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -1
Query: 88 TVSCRRRMVYYFY 50
T+ RRR +YYF+
Sbjct: 255 TIQIRRRTLYYFF 267
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 3.8
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -1
Query: 88 TVSCRRRMVYYFY 50
T+ RRR +YYF+
Sbjct: 255 TIQIRRRTLYYFF 267
>AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor type
D2 protein.
Length = 456
Score = 22.2 bits (45), Expect = 3.8
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -2
Query: 396 FTFPSAMSRRK 364
FT+PS MSRR+
Sbjct: 152 FTYPSKMSRRR 162
Score = 21.4 bits (43), Expect = 6.6
Identities = 7/17 (41%), Positives = 8/17 (47%)
Frame = -1
Query: 298 VWWWYTDNRAVPHDRMP 248
VWW VP D+ P
Sbjct: 183 VWWRAVRTEEVPEDKCP 199
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.4 bits (43), Expect = 6.6
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 4/25 (16%)
Frame = +2
Query: 260 MWDSSIIGIPPP----DVPVNDESQ 322
+W + IPPP +VP N SQ
Sbjct: 756 LWQPLSVSIPPPPSAQNVPQNTNSQ 780
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,411
Number of Sequences: 438
Number of extensions: 2444
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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