Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9j08
(331 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 36 0.010
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 29 0.89
04_03_1017 + 21747044-21748051 28 2.0
03_01_0515 - 3864796-3865425 27 2.7
11_06_0610 - 25449085-25453284 27 3.6
04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733 27 3.6
02_05_1200 - 34922073-34922273,34922397-34922469,34922976-349230... 27 4.7
07_03_1107 - 24024387-24024497,24025799-24026410 26 6.2
12_02_0046 + 12830974-12832386 26 8.3
09_06_0292 + 22075647-22075691,22077394-22077507,22077602-220778... 26 8.3
09_03_0192 + 13344558-13344942,13345038-13345591 26 8.3
04_04_0187 - 23411085-23411477,23411626-23411631 26 8.3
02_05_1336 + 35773629-35773856,35773931-35774085,35774217-357745... 26 8.3
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 35.5 bits (78), Expect = 0.010
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = +2
Query: 80 GYCPPVCSPPDCRPICGPASPLLCQSSVPPTQRXY 184
G CPP C PP C C P PL C PP Y
Sbjct: 128 GICPPPCPPP-CPLPCPPPCPLPCPPPCPPRGYGY 161
>08_01_0321 +
2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 29.1 bits (62), Expect = 0.89
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 138 LRSFARAACHQHNGAIL*ILASTYTAVTLKLCNAMDDFYSE 260
+RSF C+ N ++ ++L CN M+D+Y E
Sbjct: 829 VRSFVATECNNGNNSVAPPRFQVLRVLSLDKCNGMEDYYIE 869
>04_03_1017 + 21747044-21748051
Length = 335
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +2
Query: 89 PPVCSPPDCRPICGPASPLLCQS---SVPPTQRXYP 187
PP + PD P P+SPL + +VPP +R +P
Sbjct: 270 PPRAASPDYTPSTPPSSPLPSAAESFTVPPPRRYHP 305
>03_01_0515 - 3864796-3865425
Length = 209
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +2
Query: 89 PPVCSPPDCRPICGPASPLLCQSSVPPTQRXYPVNPCINIYS 214
PP SPP P P SP+ +SS PP PV +N Y+
Sbjct: 94 PPAASPPPPPPSPPPPSPV--KSSPPPPPAWSPVTN-VNDYT 132
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 89 PPVCSPPDCRPICGPASPLLCQSSVPPTQRXYPVNP 196
PPV SPP P+ P P+ +S PP P P
Sbjct: 1195 PPVKSPPPPAPVISPPPPV--KSPPPPAPVILPPPP 1228
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 89 PPVCSPPDCRPICGPASPLLCQSSVPPTQRXYPVNP 196
PP+ SPP P+ P P+ +S PP P P
Sbjct: 1163 PPIKSPPPPAPVISPPPPV--KSPPPPAPVILPPPP 1196
>04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733
Length = 760
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Frame = +2
Query: 83 YCPPVCSPPDCR---PICGPASPLLCQSSVPPTQRXYPVNPCINI 208
+ PPV +PP P GP P S+ P P P IN+
Sbjct: 215 FAPPVPAPPPMSAMPPPPGPIQPAPISSAAPAVPLELPPQPPINL 259
>02_05_1200 -
34922073-34922273,34922397-34922469,34922976-34923019,
34923107-34923183,34923433-34923529,34923668-34924062,
34926577-34926620,34926702-34926770,34926856-34926956,
34927689-34927856,34927940-34928141,34928269-34928708,
34928786-34928884,34929123-34929263
Length = 716
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 149 CQSSVPPTQRXYPVNP 196
C SS+PPTQ Y NP
Sbjct: 453 CDSSLPPTQSLYKGNP 468
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 89 PPVCSPPDCRPICGPASPLLCQSSVPPTQRXYP 187
PP SPP P+ P SP + PT+ P
Sbjct: 107 PPASSPPVEAPVASPPSPAAEAPATIPTKPDAP 139
>12_02_0046 + 12830974-12832386
Length = 470
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 89 PPVCSPPDCRPICGP--ASPLLCQSSV 163
PPV SPP + I GP ASP QS V
Sbjct: 279 PPVPSPPCAKKIRGPVSASPAARQSCV 305
>09_06_0292 +
22075647-22075691,22077394-22077507,22077602-22077841,
22077926-22078003,22078094-22078162,22078420-22078545,
22079108-22079188,22079272-22079460,22079597-22080434,
22082290-22082411,22082482-22082701,22082910-22083055,
22083260-22083566,22083886-22084136,22084294-22084533,
22084930-22085238
Length = 1124
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 47 LQVYKLKK*KMGYCPPVCSPPDCRPICGPASPLLCQSSVPPTQRXYPV 190
+ ++KL + PP PP RP+ G P + + VP TQ P+
Sbjct: 449 VHIHKLASHSQFHAPPHQPPPPERPVPG-IVPGIVRPPVPTTQITNPM 495
>09_03_0192 + 13344558-13344942,13345038-13345591
Length = 312
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 92 PVCSPPDCRPICGPASPLL 148
P+C P P+C SPLL
Sbjct: 162 PLCIEPPSSPVCNAPSPLL 180
>04_04_0187 - 23411085-23411477,23411626-23411631
Length = 132
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +2
Query: 83 YCPPVCSPPDCRPICGPASPLLCQSSVPP 169
Y PP PP P C P P + PP
Sbjct: 90 YWPPYWCPPPEDPTCKPCYPRYSYAPPPP 118
>02_05_1336 +
35773629-35773856,35773931-35774085,35774217-35774549,
35774615-35774927,35776992-35777168,35777281-35777397,
35777532-35777698,35777800-35778024,35778127-35778448,
35778542-35778786,35778993-35779131,35779212-35779304,
35779509-35779577
Length = 860
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -3
Query: 140 EMQVHRSDDNPEVNRLVDNNPFFTFLIYRLVNLKNFTNI 24
E+ + D+N + L D + F + RL +KN T +
Sbjct: 560 ELLYSKEDNNEHIGHLADRSKPIIFSMARLDKIKNITGL 598
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,277,255
Number of Sequences: 37544
Number of extensions: 170964
Number of successful extensions: 564
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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