Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9j06
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    27   3.4  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    25   7.9  
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3...    25   7.9  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    25   7.9  
SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|ch...    25   7.9  

>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +2

Query: 164 LNYEL*IRLLTAIFKHVIYKSRDGSLYLNDRFINI--IHSLSGQNEKLSVFDIH 319
           L +E+ ++L   +F       R  SLY N +F+N+  IH      E L ++  H
Sbjct: 332 LPFEIRVQLTRRLFWDCFMLDRLNSLYCNTQFLNLEDIHVPLPMRETLFMYKAH 385


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 358 NIRVLTMVMSFKLKFSRTFLEYSVGTMD 441
           ++R+  +  S KLK  R  L + +GT++
Sbjct: 791 SVRISILFRSMKLKIPRNLLGWDIGTLE 818


>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 191

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 315 FILVSFFGCAKSSSEHPGSDYGNV 386
           F+ +S   C +     PGS YGN+
Sbjct: 29  FVHISAGDCLREEQNRPGSKYGNL 52


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
 Frame = -2

Query: 300 SFSFCPLNEWIILIKRS-------FKYNDPSRDLY 217
           SF+  P+N+W  L           F +NDPS DLY
Sbjct: 109 SFTDVPVNKWHSLALEKLEQCCVVFDFNDPSTDLY 143


>SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 105

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 21  IYNVQNKSNNCNFQFVYVYISLYFR 95
           + N QN+ NNC ++ V+    + FR
Sbjct: 40  LLNRQNEGNNCKYKLVFSLYRVSFR 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,444
Number of Sequences: 5004
Number of extensions: 55447
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)