Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9j06
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0733 + 21062790-21063639,21063674-21063721,21065428-210654...    31   0.88 
07_03_0744 + 21121757-21122202,21122316-21122737,21122992-211231...    29   4.7  
05_03_0355 - 12885898-12886290,12886351-12886644,12886744-128868...    29   4.7  
11_04_0167 + 14382976-14385244,14389373-14389842                       28   6.2  
07_03_0749 + 21212463-21212911,21212976-21213305,21213336-212134...    28   6.2  
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210...    28   8.2  

>07_03_0733 +
           21062790-21063639,21063674-21063721,21065428-21065478,
           21065559-21065695,21065781-21065997,21066390-21066627,
           21066720-21066870,21066990-21067334
          Length = 678

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +2

Query: 161 TLNYEL*IRLLTAIFKHVIYKSRDGSLYLNDRFINIIHSLSGQNEKLSVFDIHLGQLL 334
           TLN+E    ++  I K ++Y   D S+ +  R +   + L  +N    + D  LG+LL
Sbjct: 441 TLNWEQRYNIILGIAKGILYLHEDSSIRIIHRDLKANNILLDENMNPKIADFGLGRLL 498


>07_03_0744 +
           21121757-21122202,21122316-21122737,21122992-21123117,
           21123198-21123319,21123413-21123623,21123955-21124192,
           21124284-21124431,21124547-21124879
          Length = 681

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +2

Query: 161 TLNYEL*IRLLTAIFKHVIYKSRDGSLYLNDRFINIIHSLSGQNEKLSVFDIHLGQLL 334
           +LN+E    ++  I K ++Y   D SL +  R +   + L G++ +  + D  L +LL
Sbjct: 449 SLNWEQQYNIILGIAKGILYLHEDSSLRIIHRDLKSNNILLGEDMEPKIADFGLARLL 506


>05_03_0355 -
           12885898-12886290,12886351-12886644,12886744-12886871,
           12886952-12888482
          Length = 781

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
 Frame = -3

Query: 521 KIQFHFYFFYILLLSWKSVDRCSPPRLSIVPTLYSRNVLENFSLKDITI-VRTRMFA*GL 345
           K+Q  F+F    LLSW         RL   PTL    +L N +     +   T +     
Sbjct: 302 KVQIKFHFGAGQLLSWAGQHERVKNRLGQPPTL---GILSNIAGHSSPVRTYTHILQRSS 358

Query: 344 SAAEEADQDEYQTQIVSHFVH 282
           S  E+A + E Q + VS   H
Sbjct: 359 SETEQATESEQQIREVSTMAH 379


>11_04_0167 + 14382976-14385244,14389373-14389842
          Length = 912

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -3

Query: 530 TKLKIQFHFYFFYILLLSWKSVDRCSPPRLSIVPTLYSRNVLENFSLKDIT 378
           T L++   F + Y L  +WK  D CSP  + IV T    +++ N S K+++
Sbjct: 329 TLLQVAEGFGYPYELAKTWKGNDPCSPAWVGIVCTSSDVSMI-NLSRKNLS 378


>07_03_0749 +
           21212463-21212911,21212976-21213305,21213336-21213436,
           21213758-21213883,21213962-21214083,21214177-21214450,
           21214767-21215004,21215101-21215248,21215400-21215732
          Length = 706

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +2

Query: 164 LNYEL*IRLLTAIFKHVIYKSRDGSLYLNDRFINIIHSLSGQNEKLSVFDIHLGQLL 334
           LN+E    ++  I K ++Y   D SL +  R +   + L G++ +  + D  L +LL
Sbjct: 475 LNWEQQYNIILGIAKGILYLHEDSSLRIIHRDLKSNNILLGEDMEPKIADFGLARLL 531


>02_04_0206 +
           20916063-20919669,20919816-20920014,20920935-20921074,
           20921184-20921263,20922759-20922875,20923089-20923136,
           20923509-20923601,20923881-20923958,20924114-20924218,
           20924543-20925212,20925253-20925350,20925887-20925963,
           20926035-20926117,20926208-20926287,20927060-20927139,
           20927698-20927743,20928709-20929181,20929234-20929579
          Length = 2139

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 570 IGDLKFQHD*VASLMLSIRPNPVTLAISISEKLHFWI 680
           IG  K  HD +  +MLS    P T A S  E  HFW+
Sbjct: 576 IGVEKLAHDLLGEVMLSFDSRPQTEA-SGDENQHFWM 611


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,149,322
Number of Sequences: 37544
Number of extensions: 309205
Number of successful extensions: 517
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)